CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs29_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs29_2015 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 108.01 cM
Features by Type:
147 SNP
147 Total

Map Features

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Items 1 to 25 of 147.       of 6 | Next
Quercus petraea - Genetic_Qs29_2015 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AMCLE_683 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG2 s_1AMCLE_683 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AMCLE_683 SNP 0.70 (cM) Automated name-based View Maps
s_1AJKFL_1083 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AJKFL_1083 SNP 0.70 (cM) Automated name-based View Maps
s_1B5MB_806 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG2 s_1B5MB_806 SNP 0.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1B5MB_806 SNP 0.70 (cM) Automated name-based View Maps
s_1BOTIP_938 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BOTIP_938 SNP 0.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 s_1BOTIP_938 SNP 0.57 (cM) Automated name-based View Maps
v_12046_318 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_12046_318 SNP 0.70 (cM) Automated name-based View Maps
s_1B624Y_536 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG2 s_1B624Y_536 SNP 0.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1B624Y_536 SNP 1.00 (cM) Automated name-based View Maps
s_2GFRR5_365 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG2 s_2GFRR5_365 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2GFRR5_365 SNP 1.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_2GFRR5_365 SNP 0.93 (cM) Automated name-based View Maps
s_1BZ7M7_1818 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1BZ7M7_1818 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BZ7M7_1818 SNP 1.10 (cM) Automated name-based View Maps
s_1AEVRR_401 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AEVRR_401 SNP 1.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1AEVRR_401 SNP 1.24 (cM) Automated name-based View Maps
s_1B37A9_1096 SNP 0.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1B37A9_1096 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1B37A9_1096 SNP 1.85 (cM) Automated name-based View Maps
s_1AI7N3_927 SNP 0.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AI7N3_927 SNP 2.10 (cM) Automated name-based View Maps
s_1A74WY_1094 SNP 0.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A74WY_1094 SNP 2.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A74WY_1094 SNP 5.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1A74WY_1094 SNP 2.16 (cM) Automated name-based View Maps
v_366_193 SNP 1.75 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_366_193 SNP 3.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 v_366_193 SNP 3.43 (cM) Automated name-based View Maps
v_49_504 SNP 1.75 Quercus robur - Genetic_x11P2_2015 - LG2 v_49_504 SNP 6.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 v_49_504 SNP 6.18 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_49_504 SNP 3.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 v_49_504 SNP 3.09 (cM) Automated name-based View Maps
s_1BB2CK_403 SNP 1.75 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BB2CK_403 SNP 3.60 (cM) Automated name-based View Maps
s_1A1CT3_2123 SNP 1.75 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A1CT3_2123 SNP 3.60 (cM) Automated name-based View Maps
s_1A8HNW_944 SNP 1.75 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A8HNW_944 SNP 3.60 (cM) Automated name-based View Maps
s_1CLX4W_509 SNP 1.75 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CLX4W_509 SNP 3.60 (cM) Automated name-based View Maps
s_1AFN4Y_1008 SNP 1.75 Quercus robur - Genetic_x3P_2015 - LG2 s_1AFN4Y_1008 SNP 4.01 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AFN4Y_1008 SNP 4.60 (cM) Automated name-based View Maps
s_1A18DI_793 SNP 1.75 Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1A18DI_793 SNP 4.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A18DI_793 SNP 7.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1A18DI_793 SNP 4.01 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A18DI_793 SNP 4.70 (cM) Automated name-based View Maps
v_9806_117 SNP 2.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_9806_117 SNP 5.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 v_9806_117 SNP 7.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 v_9806_117 SNP 7.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 v_9806_117 SNP 4.00 (cM) Automated name-based View Maps
v_999_1108 SNP 2.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_999_1108 SNP 5.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 v_999_1108 SNP 6.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 v_999_1108 SNP 4.94 (cM) Automated name-based View Maps
s_2HWUUV_420 SNP 2.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2HWUUV_420 SNP 5.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_2HWUUV_420 SNP 4.50 (cM) Automated name-based View Maps
s_1BRVIG_130 SNP 2.63 Quercus robur - Genetic_x11P2_2015 - LG2 s_1BRVIG_130 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1BRVIG_130 SNP 5.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BRVIG_130 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1BRVIG_130 SNP 7.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1BRVIG_130 SNP 5.25 (cM) Automated name-based View Maps
s_2GR2F_215 SNP 3.51 Quercus petraea - Genetic_Qs21_2015 - LG2 s_2GR2F_215 SNP 6.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2GR2F_215 SNP 5.90 (cM) Automated name-based View Maps

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