CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs29_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs29_2015 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 63.25 cM
Features by Type:
58 SNP
58 Total

Map Features

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Items 1 to 25 of 58.       of 3 | Next
Quercus petraea - Genetic_Qs29_2015 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_2589_274 SNP 40.40 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_2589_274 SNP 40.10 (cM) Automated name-based View Maps
s_1CCJPV_1444 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1CCJPV_1444 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CCJPV_1444 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1CCJPV_1444 SNP 0.93 (cM) Automated name-based View Maps
s_1A1QE5_1745 SNP 0.88 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1A1QE5_1745 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_1A1QE5_1745 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A1QE5_1745 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A1QE5_1745 SNP 0.90 (cM) Automated name-based View Maps
s_1CPHMB_436 SNP 0.88 Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CPHMB_436 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CPHMB_436 SNP 0.90 (cM) Automated name-based View Maps
s_ARYEK_268 SNP 2.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_ARYEK_268 SNP 2.60 (cM) Automated name-based View Maps
s_2F7OY9_468 SNP 3.51 Quercus robur - Genetic_x3P_2015 - LG4 s_2F7OY9_468 SNP 3.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_2F7OY9_468 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2F7OY9_468 SNP 3.20 (cM) Automated name-based View Maps
s_2F1GB0_316 SNP 3.51 Quercus robur - Genetic_x3P_2015 - LG4 s_2F1GB0_316 SNP 3.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_2F1GB0_316 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2F1GB0_316 SNP 3.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_2F1GB0_316 SNP 6.52 (cM) Automated name-based View Maps
s_1BHPHQ_1326 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BHPHQ_1326 SNP 3.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1BHPHQ_1326 SNP 2.00 (cM) Automated name-based View Maps
s_2HO4LV_897 SNP 3.51 Quercus petraea - Genetic_Qs21_2015 - LG4 s_2HO4LV_897 SNP 5.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2HO4LV_897 SNP 3.50 (cM) Automated name-based View Maps
s_1AJBPR_2155 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AJBPR_2155 SNP 3.50 (cM) Automated name-based View Maps
s_2FM0WG_898 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FM0WG_898 SNP 3.50 (cM) Automated name-based View Maps
s_2I99P1_491 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2I99P1_491 SNP 3.50 (cM) Automated name-based View Maps
s_1C4U90_1246 SNP 5.26 Quercus petraea - Genetic_Qs21_2015 - LG4 s_1C4U90_1246 SNP 7.15 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1C4U90_1246 SNP 5.20 (cM) Automated name-based View Maps
s_1AK1AV_1778 SNP 5.26 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AK1AV_1778 SNP 5.20 (cM) Automated name-based View Maps
s_1DSJN5_1340 SNP 6.14 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1DSJN5_1340 SNP 6.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1DSJN5_1340 SNP 10.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1DSJN5_1340 SNP 10.13 (cM) Automated name-based View Maps
s_1EO7FI_353 SNP 7.02 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1EO7FI_353 SNP 7.00 (cM) Automated name-based View Maps
s_1DGCGG_507 SNP 7.02 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1DGCGG_507 SNP 7.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1DGCGG_507 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1DGCGG_507 SNP 8.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1DGCGG_507 SNP 7.30 (cM) Automated name-based View Maps
s_1CSU8L_330 SNP 7.90 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CSU8L_330 SNP 8.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1CSU8L_330 SNP 14.01 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1CSU8L_330 SNP 12.94 (cM) Automated name-based View Maps
s_1A8PHD_860 SNP 7.90 Quercus petraea - Genetic_Qs21_2015 - LG4 s_1A8PHD_860 SNP 11.15 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1A8PHD_860 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A8PHD_860 SNP 8.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1A8PHD_860 SNP 8.34 (cM) Automated name-based View Maps
s_2FWRZI_737 SNP 7.90 Quercus robur - Genetic_x3P_2015 - LG4 s_2FWRZI_737 SNP 8.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FWRZI_737 SNP 8.50 (cM) Automated name-based View Maps
v_706_168 SNP 7.90 Quercus petraea - Genetic_Qs28f_2015 - LG4 v_706_168 SNP 14.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 v_706_168 SNP 7.02 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 v_706_168 SNP 13.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 v_706_168 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_706_168 SNP 8.50 (cM) Automated name-based View Maps
s_1A0OCY_518 SNP 8.77 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A0OCY_518 SNP 8.80 (cM) Automated name-based View Maps
s_1B59MJ_737 SNP 11.98 Quercus robur - Genetic_x11P1_2015 - LG4 s_1B59MJ_737 SNP 9.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B59MJ_737 SNP 9.60 (cM) Automated name-based View Maps
v_2797_141 SNP 9.65 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_2797_141 SNP 9.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_2797_141 SNP 7.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 v_2797_141 SNP 7.72 (cM) Automated name-based View Maps
s_BB25E_574 SNP 13.16 Quercus petraea - Genetic_Qs28m_2015 - LG4 s_BB25E_574 SNP 15.75 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_BB25E_574 SNP 10.50 (cM) Automated name-based View Maps

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