CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs29_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG5
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs29_2015 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 83.49 cM
Features by Type:
75 SNP
75 Total

Map Features

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Items 1 to 25 of 75.       of 3 | Next
Quercus petraea - Genetic_Qs29_2015 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_7994_364 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG5 v_7994_364 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_7994_364 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 v_7994_364 SNP 0.00 (cM) Automated name-based View Maps
s_1A05K9_232 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A05K9_232 SNP 0.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A05K9_232 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1A05K9_232 SNP 0.00 (cM) Automated name-based View Maps
s_1B825D_1017 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B825D_1017 SNP 1.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1B825D_1017 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1B825D_1017 SNP 2.25 (cM) Automated name-based View Maps
s_1D2YPG_755 SNP 0.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1D2YPG_755 SNP 1.10 (cM) Automated name-based View Maps
s_1CXIV3_324 SNP 1.75 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1CXIV3_324 SNP 1.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1CXIV3_324 SNP 0.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1CXIV3_324 SNP 3.09 (cM) Automated name-based View Maps
s_1ADZ8J_508 SNP 4.39 Quercus petraea - Genetic_Qs21_2015 - LG5 s_1ADZ8J_508 SNP 1.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1ADZ8J_508 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1ADZ8J_508 SNP 3.40 (cM) Automated name-based View Maps
s_1BVXGO_1224 SNP 9.67 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BVXGO_1224 SNP 5.70 (cM) Automated name-based View Maps
s_1B9KYX_730 SNP 11.43 Quercus robur - Genetic_x3P_2015 - LG5 s_1B9KYX_730 SNP 6.79 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B9KYX_730 SNP 7.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1B9KYX_730 SNP 7.72 (cM) Automated name-based View Maps
s_1A1WA5_950 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A1WA5_950 SNP 10.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A1WA5_950 SNP 10.29 (cM) Automated name-based View Maps
v_12333_257 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12333_257 SNP 10.00 (cM) Automated name-based View Maps
s_1A6ZXS_174 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A6ZXS_174 SNP 10.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A6ZXS_174 SNP 10.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1A6ZXS_174 SNP 8.95 (cM) Automated name-based View Maps
s_1BJ6W0_1015 SNP 14.94 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BJ6W0_1015 SNP 14.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BJ6W0_1015 SNP 10.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1BJ6W0_1015 SNP 9.72 (cM) Automated name-based View Maps
s_1A0EA1_495 SNP 17.57 Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A0EA1_495 SNP 11.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1A0EA1_495 SNP 14.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A0EA1_495 SNP 11.50 (cM) Automated name-based View Maps
s_1B2B9V_467 SNP 17.57 Quercus petraea - Genetic_Qs21_2015 - LG5 s_1B2B9V_467 SNP 12.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B2B9V_467 SNP 11.50 (cM) Automated name-based View Maps
v_13970_456 SNP 17.57 Quercus petraea - Genetic_Qs28f_2015 - LG5 v_13970_456 SNP 12.01 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 v_13970_456 SNP 18.02 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_13970_456 SNP 11.50 (cM) Automated name-based View Maps
s_1BHC4X_962 SNP 18.45 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BHC4X_962 SNP 12.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1BHC4X_962 SNP 12.00 (cM) Automated name-based View Maps
s_1C9PB_1574 SNP 18.45 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1C9PB_1574 SNP 12.10 (cM) Automated name-based View Maps
s_1BACW0_232 SNP 19.33 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1BACW0_232 SNP 13.15 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BACW0_232 SNP 20.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BACW0_232 SNP 13.00 (cM) Automated name-based View Maps
v_12206_204 SNP 21.08 Quercus petraea - Genetic_Qs21_2015 - LG5 v_12206_204 SNP 15.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 v_12206_204 SNP 19.46 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12206_204 SNP 14.70 (cM) Automated name-based View Maps
v_12044_391 SNP 21.08 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12044_391 SNP 14.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 v_12044_391 SNP 19.46 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 v_12044_391 SNP 15.43 (cM) Automated name-based View Maps
s_1AGB48_128 SNP 21.96 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1AGB48_128 SNP 14.01 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AGB48_128 SNP 24.20 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AGB48_128 SNP 15.60 (cM) Automated name-based View Maps
s_1A8IC2_1672 SNP 22.84 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A8IC2_1672 SNP 16.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A8IC2_1672 SNP 24.76 (cM) Automated name-based View Maps
s_1A368K_199 SNP 28.12 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A368K_199 SNP 25.32 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A368K_199 SNP 18.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1A368K_199 SNP 17.15 (cM) Automated name-based View Maps
s_2H5LD7_429 SNP 28.12 Quercus petraea - Genetic_Qs21_2015 - LG5 s_2H5LD7_429 SNP 20.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_2H5LD7_429 SNP 23.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2H5LD7_429 SNP 19.20 (cM) Automated name-based View Maps
v_11257_73 SNP 30.75 Quercus petraea - Genetic_Qs28m_2015 - LG5 v_11257_73 SNP 29.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_11257_73 SNP 21.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 v_11257_73 SNP 23.16 (cM) Automated name-based View Maps

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