CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs29_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs29_2015 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 52.69 cM
Features by Type:
71 SNP
71 Total

Map Features

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Items 1 to 25 of 71.       of 3 | Next
Quercus petraea - Genetic_Qs29_2015 - LG7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_12101_526 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_12101_526 SNP 2.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 v_12101_526 SNP 0.00 (cM) Automated name-based View Maps
s_1AEOKC_1365 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG7 s_1AEOKC_1365 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1AEOKC_1365 SNP 2.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AEOKC_1365 SNP 2.30 (cM) Automated name-based View Maps
v_15652_53 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG7 v_15652_53 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_15652_53 SNP 2.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 v_15652_53 SNP 2.25 (cM) Automated name-based View Maps
s_1ARTR9_777 SNP 0.88 Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1ARTR9_777 SNP 0.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1ARTR9_777 SNP 3.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1ARTR9_777 SNP 0.56 (cM) Automated name-based View Maps
s_1B6SDN_193 SNP 2.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1B6SDN_193 SNP 4.20 (cM) Automated name-based View Maps
s_1A458M_1306 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A458M_1306 SNP 5.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1A458M_1306 SNP 5.72 (cM) Automated name-based View Maps
s_2HDSH4_114 SNP 5.26 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_2HDSH4_114 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_2HDSH4_114 SNP 6.00 (cM) Automated name-based View Maps
s_1CUNJ6_862 SNP 5.26 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1CUNJ6_862 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1CUNJ6_862 SNP 2.81 (cM) Automated name-based View Maps
s_2FMAUB_592 SNP 5.26 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_2FMAUB_592 SNP 6.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_2FMAUB_592 SNP 3.37 (cM) Automated name-based View Maps
v_10539_59 SNP 7.90 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_10539_59 SNP 8.60 (cM) Automated name-based View Maps
s_1AMMQ0_397 SNP 7.90 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AMMQ0_397 SNP 8.60 (cM) Automated name-based View Maps
v_4582_229 SNP 9.65 Quercus robur - Genetic_x3P_2015 - LG7 v_4582_229 SNP 8.34 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_4582_229 SNP 11.60 (cM) Automated name-based View Maps
s_1BD941_1019 SNP 12.29 Quercus petraea - Genetic_Qs21_2015 - LG7 s_1BD941_1019 SNP 13.74 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1BD941_1019 SNP 13.00 (cM) Automated name-based View Maps
s_1A528R_254 SNP 12.29 Quercus petraea - Genetic_Qs21_2015 - LG7 s_1A528R_254 SNP 15.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A528R_254 SNP 13.00 (cM) Automated name-based View Maps
s_AE01D5P8K_293 SNP 13.16 Quercus robur - Genetic_A4_2015 - LG7 s_AE01D5P8K_293 SNP 8.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_AE01D5P8K_293 SNP 13.80 (cM) Automated name-based View Maps
s_1A3GFF_398 SNP 13.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A3GFF_398 SNP 13.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1A3GFF_398 SNP 15.46 (cM) Automated name-based View Maps
s_1AHLGV_563 SNP 13.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AHLGV_563 SNP 13.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1AHLGV_563 SNP 15.46 (cM) Automated name-based View Maps
s_1C6PVZ_251 SNP 14.92 Quercus robur - Genetic_A4_2015 - LG7 s_1C6PVZ_251 SNP 10.19 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1C6PVZ_251 SNP 16.59 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1C6PVZ_251 SNP 15.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1C6PVZ_251 SNP 11.41 (cM) Automated name-based View Maps
s_1A8TK5_500 SNP 14.92 Quercus robur - Genetic_x11P1_2015 - LG7 s_1A8TK5_500 SNP 16.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 s_1A8TK5_500 SNP 10.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1A8TK5_500 SNP 11.41 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1A8TK5_500 SNP 17.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A8TK5_500 SNP 15.00 (cM) Automated name-based View Maps
s_1AUTDS_1390 SNP 14.92 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AUTDS_1390 SNP 15.60 (cM) Automated name-based View Maps
s_1AXBZV_415 SNP 14.92 Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1AXBZV_415 SNP 11.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1AXBZV_415 SNP 16.59 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AXBZV_415 SNP 15.80 (cM) Automated name-based View Maps
s_1CZ6WS_498 SNP 14.92 Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1CZ6WS_498 SNP 11.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1CZ6WS_498 SNP 16.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_1CZ6WS_498 SNP 12.66 (cM) Automated name-based View Maps
s_1E0WR4_1117 SNP 14.92 Quercus robur - Genetic_x3P_2015 - LG7 s_1E0WR4_1117 SNP 12.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1E0WR4_1117 SNP 16.20 (cM) Automated name-based View Maps
s_1BGZR0_462 SNP 20.20 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1BGZR0_462 SNP 23.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1BGZR0_462 SNP 18.54 (cM) Automated name-based View Maps
s_1DLFVX_1051 SNP 21.08 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1DLFVX_1051 SNP 23.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_1DLFVX_1051 SNP 18.52 (cM) Automated name-based View Maps

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