CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs29_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs29_2015 [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 68.53 cM
Features by Type:
58 SNP
58 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 58.       of 3 | Next
Quercus petraea - Genetic_Qs29_2015 - LG8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BNA10_750 SNP 1.75 No other positions
s_1C3Q77_1126 SNP 4.39 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1C3Q77_1126 SNP 6.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG8 s_1C3Q77_1126 SNP 3.37 (cM) Automated name-based View Maps
s_AE02HUB7Z_323 SNP 4.39 No other positions
v_2573_40 SNP 7.02 Quercus petraea - Genetic_Qs21_2015 - LG8 v_2573_40 SNP 8.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG8 v_2573_40 SNP 5.56 (cM) Automated name-based View Maps
s_A6LVO_403 SNP 7.02 Quercus robur - Genetic_A4_2015 - LG8 s_A6LVO_403 SNP 5.56 (cM) Automated name-based View Maps
s_1AH71Y_771 SNP 7.02 Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1AH71Y_771 SNP 6.86 (cM) Automated name-based View Maps
s_AE01CC5DQ_699 SNP 5.27 No other positions
v_12073_585 SNP 8.78 Quercus robur - Genetic_x11P2_2015 - LG8 v_12073_585 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG8 v_12073_585 SNP 6.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG8 v_12073_585 SNP 3.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 v_12073_585 SNP 6.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG8 v_12073_585 SNP 8.00 (cM) Automated name-based View Maps
s_1A9JHU_1729 SNP 8.78 No other positions
v_1433_37 SNP 14.95 No other positions
s_1AXZWN_1306 SNP 15.83 Quercus robur - Genetic_A4_2015 - LG8 s_1AXZWN_1306 SNP 16.37 (cM) Automated name-based View Maps
s_1DNI7D_820 SNP 21.12 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1DNI7D_820 SNP 21.75 (cM) Automated name-based View Maps
s_1A3EF7_1405 SNP 23.75 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1A3EF7_1405 SNP 23.46 (cM) Automated name-based View Maps
s_1A8YKX_1045 SNP 24.63 Quercus robur - Genetic_A4_2015 - LG8 s_1A8YKX_1045 SNP 23.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1A8YKX_1045 SNP 14.00 (cM) Automated name-based View Maps
s_1A95S_1074 SNP 24.63 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1A95S_1074 SNP 25.18 (cM) Automated name-based View Maps
v_9895_247 SNP 25.51 Quercus petraea - Genetic_Qs21_2015 - LG8 v_9895_247 SNP 29.18 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 v_9895_247 SNP 16.29 (cM) Automated name-based View Maps
s_1BA0X5_1261 SNP 31.66 Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1BA0X5_1261 SNP 19.15 (cM) Automated name-based View Maps
s_1A7FT5_629 SNP 31.66 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1A7FT5_629 SNP 34.04 (cM) Automated name-based View Maps
v_5556_1114 SNP 31.66 Quercus petraea - Genetic_Qs28f_2015 - LG8 v_5556_1114 SNP 19.15 (cM) Automated name-based View Maps
s_2ILWTJ_482 SNP 31.66 Quercus robur - Genetic_A4_2015 - LG8 s_2ILWTJ_482 SNP 32.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 s_2ILWTJ_482 SNP 19.72 (cM) Automated name-based View Maps
s_1A89ZZ_1668 SNP 34.30 No other positions
s_2F0UUU_633 SNP 35.17 No other positions
v_10228_223 SNP 35.17 Quercus petraea - Genetic_Qs21_2015 - LG8 v_10228_223 SNP 39.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG8 v_10228_223 SNP 36.13 (cM) Automated name-based View Maps
s_AE01E3CKJ_1211 SNP 36.93 No other positions
s_B6TYR_817 SNP 37.81 No other positions

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