CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs29_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs29_2015 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 47.41 cM
Features by Type:
76 SNP
76 Total

Map Features

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Items 1 to 25 of 76.       of 4 | Next
Quercus petraea - Genetic_Qs29_2015 - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AFHOM_409 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AFHOM_409 SNP 1.90 (cM) Automated name-based View Maps
s_1AGEGO_1029 SNP 1.75 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1AGEGO_1029 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AGEGO_1029 SNP 3.70 (cM) Automated name-based View Maps
s_1AIUTD_1152 SNP 7.04 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1AIUTD_1152 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AIUTD_1152 SNP 6.20 (cM) Automated name-based View Maps
v_9305_242 SNP 7.92 Quercus petraea - Genetic_Qs28m_2015 - LG12 v_9305_242 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_9305_242 SNP 6.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG12 v_9305_242 SNP 6.01 (cM) Automated name-based View Maps
s_2F20KC_1356 SNP 8.79 Quercus robur - Genetic_x3P_2015 - LG12 s_2F20KC_1356 SNP 4.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2F20KC_1356 SNP 6.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2F20KC_1356 SNP 3.93 (cM) Automated name-based View Maps
s_1BJ16D_1293 SNP 7.92 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BJ16D_1293 SNP 6.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_1BJ16D_1293 SNP 5.56 (cM) Automated name-based View Maps
s_1A7FEI_1425 SNP 8.79 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A7FEI_1425 SNP 6.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_1A7FEI_1425 SNP 5.87 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1A7FEI_1425 SNP 2.86 (cM) Automated name-based View Maps
s_1AOVAB_1327 SNP 8.79 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AOVAB_1327 SNP 6.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1AOVAB_1327 SNP 2.86 (cM) Automated name-based View Maps
s_1EO8V5_710 SNP 8.79 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1EO8V5_710 SNP 5.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1EO8V5_710 SNP 7.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1EO8V5_710 SNP 7.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_1EO8V5_710 SNP 7.11 (cM) Automated name-based View Maps
s_1A8MJL_402 SNP 11.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A8MJL_402 SNP 9.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_1A8MJL_402 SNP 10.19 (cM) Automated name-based View Maps
s_2GRLOB_525 SNP 11.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2GRLOB_525 SNP 9.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_2GRLOB_525 SNP 10.19 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2GRLOB_525 SNP 7.30 (cM) Automated name-based View Maps
s_1BDZAM_376 SNP 12.30 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BDZAM_376 SNP 10.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1BDZAM_376 SNP 5.43 (cM) Automated name-based View Maps
s_1A4OYX_305 SNP 12.30 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A4OYX_305 SNP 10.40 (cM) Automated name-based View Maps
v_10140_119 SNP 12.30 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_10140_119 SNP 12.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 v_10140_119 SNP 11.74 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 v_10140_119 SNP 11.74 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 v_10140_119 SNP 9.55 (cM) Automated name-based View Maps
s_1A91EL_645 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A91EL_645 SNP 14.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1A91EL_645 SNP 10.00 (cM) Automated name-based View Maps
s_1BL4MC_720 SNP 14.94 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BL4MC_720 SNP 14.60 (cM) Automated name-based View Maps
s_1APYOC_629 SNP 17.57 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1APYOC_629 SNP 11.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1APYOC_629 SNP 17.20 (cM) Automated name-based View Maps
s_1A5FIY_375 SNP 18.45 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1A5FIY_375 SNP 12.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_1A5FIY_375 SNP 22.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A5FIY_375 SNP 18.10 (cM) Automated name-based View Maps
s_1AJC29_945 SNP 19.32 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AJC29_945 SNP 22.10 (cM) Automated name-based View Maps
s_2FW0V9_548 SNP 20.20 Quercus petraea - Genetic_Qs21_2015 - LG12 s_2FW0V9_548 SNP 17.72 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2FW0V9_548 SNP 22.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 s_2FW0V9_548 SNP 19.15 (cM) Automated name-based View Maps
s_1A19X8_323 SNP 20.20 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A19X8_323 SNP 22.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1A19X8_323 SNP 17.98 (cM) Automated name-based View Maps
v_7050_174 SNP 20.20 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_7050_174 SNP 22.90 (cM) Automated name-based View Maps
s_1BC1P_653 SNP 20.20 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1BC1P_653 SNP 19.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 s_1BC1P_653 SNP 29.35 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BC1P_653 SNP 24.30 (cM) Automated name-based View Maps
s_1B0DDG_1094 SNP 20.20 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1B0DDG_1094 SNP 19.11 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1B0DDG_1094 SNP 24.30 (cM) Automated name-based View Maps
s_1BICBY_963 SNP 21.08 Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1BICBY_963 SNP 24.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1BICBY_963 SNP 19.67 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BICBY_963 SNP 26.40 (cM) Automated name-based View Maps

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