CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



Save link

* Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link.


General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x11P1_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x11P1_2015 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 61.32 cM
Features by Type:
96 SNP
96 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 96.       of 4 | Next
Quercus robur - Genetic_x11P1_2015 - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BM05L_302 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BM05L_302 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1BM05L_302 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BM05L_302 SNP 0.00 (cM) Automated name-based View Maps
s_1BXS0Q_1704 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 s_1BXS0Q_1704 SNP 0.86 (cM) Automated name-based View Maps
s_1D8OAY_519 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
s_1A5KNH_1650 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG1 s_1A5KNH_1650 SNP 0.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
s_1CDSUA_1042 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
s_2G5N5L_1389 SNP 0.00 Quercus petraea - Genetic_Qs21_2015 - LG1 s_2G5N5L_1389 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_2G5N5L_1389 SNP 0.00 (cM) Automated name-based View Maps
s_1BY538_833 SNP 0.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BY538_833 SNP 1.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BY538_833 SNP 2.16 (cM) Automated name-based View Maps
s_2IR1HL_748 SNP 0.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_2IR1HL_748 SNP 1.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_2IR1HL_748 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_2IR1HL_748 SNP 1.75 (cM) Automated name-based View Maps
v_1377_170 SNP 1.69 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_1377_170 SNP 2.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 v_1377_170 SNP 1.71 (cM) Automated name-based View Maps
v_5958_148 SNP 3.37 Quercus petraea - Genetic_Qs21_2015 - LG1 v_5958_148 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_5958_148 SNP 3.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_5958_148 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_5958_148 SNP 3.70 (cM) Automated name-based View Maps
s_1A7WX0_1019 SNP 3.93 Quercus robur - Genetic_x3P_2015 - LG1 s_1A7WX0_1019 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A7WX0_1019 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1A7WX0_1019 SNP 3.51 (cM) Automated name-based View Maps
s_1C27ND_524 SNP 3.93 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1C27ND_524 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1C27ND_524 SNP 3.71 (cM) Automated name-based View Maps
s_1ASTHK_964 SNP 5.62 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ASTHK_964 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1ASTHK_964 SNP 4.32 (cM) Automated name-based View Maps
s_1AJHI_335 SNP 5.62 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AJHI_335 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1AJHI_335 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1AJHI_335 SNP 4.63 (cM) Automated name-based View Maps
s_1A5JRZ_890 SNP 3.93 Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5JRZ_890 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5JRZ_890 SNP 3.50 (cM) Automated name-based View Maps
s_1A8P1M_1009 SNP 6.18 Quercus robur - Genetic_x11P2_2015 - LG1 s_1A8P1M_1009 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A8P1M_1009 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1A8P1M_1009 SNP 7.42 (cM) Automated name-based View Maps
v_6691_155 SNP 6.74 Quercus robur - Genetic_x11P2_2015 - LG1 v_6691_155 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_6691_155 SNP 4.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_6691_155 SNP 5.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_6691_155 SNP 7.42 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG1 v_6691_155 SNP 4.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 v_6691_155 SNP 3.71 (cM) Automated name-based View Maps
v_AA11YC02_249 SNP 7.87 Quercus robur - Genetic_x11P2_2015 - LG1 v_AA11YC02_249 SNP 4.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_AA11YC02_249 SNP 8.65 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_AA11YC02_249 SNP 5.00 (cM) Automated name-based View Maps
s_1A5O64_1214 SNP 7.87 Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5O64_1214 SNP 3.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 s_1A5O64_1214 SNP 4.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1A5O64_1214 SNP 5.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5O64_1214 SNP 5.00 (cM) Automated name-based View Maps
s_1ANLMF_968 SNP 8.43 Quercus robur - Genetic_x11P2_2015 - LG1 s_1ANLMF_968 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ANLMF_968 SNP 5.60 (cM) Automated name-based View Maps
s_1A9CZR_531 SNP 9.55 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A9CZR_531 SNP 7.80 (cM) Automated name-based View Maps
s_1B72GW_391 SNP 9.55 Quercus petraea - Genetic_Qs21_2015 - LG1 s_1B72GW_391 SNP 7.15 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1B72GW_391 SNP 7.80 (cM) Automated name-based View Maps
s_1AZCTX_158 SNP 10.68 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1AZCTX_158 SNP 14.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AZCTX_158 SNP 9.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AZCTX_158 SNP 17.56 (cM) Automated name-based View Maps
v_11977_97 SNP 12.36 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_11977_97 SNP 9.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_11977_97 SNP 7.90 (cM) Automated name-based View Maps
s_1DFASW_1502 SNP 16.30 Quercus robur - Genetic_x11P2_2015 - LG1 s_1DFASW_1502 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1DFASW_1502 SNP 10.60 (cM) Automated name-based View Maps

CMap Contact

Evoltree    BioGeCo    INRA    logo_ff    logo_gmod