CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x11P1_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x11P1_2015 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 83.76 cM
Features by Type:
210 SNP
210 Total

Map Features

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Items 1 to 25 of 210.       of 9 | Next
Quercus robur - Genetic_x11P1_2015 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A9VEF_1737 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG2 s_1A9VEF_1737 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1A9VEF_1737 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A9VEF_1737 SNP 0.00 (cM) Automated name-based View Maps
s_1A7A5_1484 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG2 s_1A7A5_1484 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A7A5_1484 SNP 0.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1A7A5_1484 SNP 0.00 (cM) Automated name-based View Maps
s_1A76ZA_1744 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG2 s_1A76ZA_1744 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A76ZA_1744 SNP 0.60 (cM) Automated name-based View Maps
v_1917_189 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_1917_189 SNP 0.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 v_1917_189 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 v_1917_189 SNP 0.29 (cM) Automated name-based View Maps
s_2GFRR5_365 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG2 s_2GFRR5_365 SNP 0.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2GFRR5_365 SNP 1.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_2GFRR5_365 SNP 0.00 (cM) Automated name-based View Maps
s_1A4BEL_1084 SNP 0.56 Quercus robur - Genetic_x11P2_2015 - LG2 s_1A4BEL_1084 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1A4BEL_1084 SNP 1.85 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A4BEL_1084 SNP 1.90 (cM) Automated name-based View Maps
s_1EN7U8_1231 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1EN7U8_1231 SNP 1.90 (cM) Automated name-based View Maps
s_2F7MBA_1112 SNP 0.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2F7MBA_1112 SNP 2.20 (cM) Automated name-based View Maps
s_1BK7TK_511 SNP 0.56 Quercus robur - Genetic_x3P_2015 - LG2 s_1BK7TK_511 SNP 1.85 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BK7TK_511 SNP 2.40 (cM) Automated name-based View Maps
s_1BBASQ_742 SNP 0.56 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1BBASQ_742 SNP 2.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BBASQ_742 SNP 2.40 (cM) Automated name-based View Maps
s_1AT0CP_1037 SNP 1.69 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AT0CP_1037 SNP 3.30 (cM) Automated name-based View Maps
s_1A5Y13_1066 SNP 1.69 Quercus robur - Genetic_x3P_2015 - LG2 s_1A5Y13_1066 SNP 3.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 s_1A5Y13_1066 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A5Y13_1066 SNP 3.50 (cM) Automated name-based View Maps
s_1AKX5L_342 SNP 1.69 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1AKX5L_342 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AKX5L_342 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1AKX5L_342 SNP 6.14 (cM) Automated name-based View Maps
s_2IXCCB_597 SNP 2.25 Quercus robur - Genetic_x11P2_2015 - LG2 s_2IXCCB_597 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_2IXCCB_597 SNP 4.01 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2IXCCB_597 SNP 4.10 (cM) Automated name-based View Maps
s_1CM6K9_399 SNP 2.81 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CM6K9_399 SNP 4.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 s_1CM6K9_399 SNP 3.71 (cM) Automated name-based View Maps
s_1CEHMK_1519 SNP 2.81 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1CEHMK_1519 SNP 5.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CEHMK_1519 SNP 4.40 (cM) Automated name-based View Maps
s_2I25L3_821 SNP 2.81 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2I25L3_821 SNP 4.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_2I25L3_821 SNP 4.01 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_2I25L3_821 SNP 7.90 (cM) Automated name-based View Maps
s_2HWUUV_420 SNP 4.50 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2HWUUV_420 SNP 5.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_2HWUUV_420 SNP 2.63 (cM) Automated name-based View Maps
s_1BRVIG_130 SNP 5.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BRVIG_130 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BRVIG_130 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1BRVIG_130 SNP 5.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1BRVIG_130 SNP 9.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1BRVIG_130 SNP 7.30 (cM) Automated name-based View Maps
s_1BUHBA_1720 SNP 5.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BUHBA_1720 SNP 6.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1BUHBA_1720 SNP 5.56 (cM) Automated name-based View Maps
v_6854_106 SNP 5.62 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_6854_106 SNP 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 v_6854_106 SNP 9.65 (cM) Automated name-based View Maps
s_1E3YM7_477 SNP 6.74 Quercus robur - Genetic_x3P_2015 - LG2 s_1E3YM7_477 SNP 7.41 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1E3YM7_477 SNP 8.20 (cM) Automated name-based View Maps
s_2G5FEF_1015 SNP 6.74 Quercus robur - Genetic_x3P_2015 - LG2 s_2G5FEF_1015 SNP 7.41 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2G5FEF_1015 SNP 8.20 (cM) Automated name-based View Maps
s_1AJF4M_545 SNP 6.74 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AJF4M_545 SNP 8.70 (cM) Automated name-based View Maps
s_1BX4F_1374 SNP 6.74 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BX4F_1374 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BX4F_1374 SNP 9.50 (cM) Automated name-based View Maps

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