CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x11P1_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x11P1_2015 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 59.76 cM
Features by Type:
66 SNP
66 Total

Map Features

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Items 1 to 25 of 66.       of 3 | Next
Quercus robur - Genetic_x11P1_2015 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_EOZRA_191 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_EOZRA_191 SNP 1.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_EOZRA_191 SNP 0.88 (cM) Automated name-based View Maps
s_1B54MC_944 SNP 0.56 Quercus robur - Genetic_x11P2_2015 - LG4 s_1B54MC_944 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1B54MC_944 SNP 0.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1B54MC_944 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B54MC_944 SNP 1.20 (cM) Automated name-based View Maps
s_1AEUAK_82 SNP 0.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AEUAK_82 SNP 1.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1AEUAK_82 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1AEUAK_82 SNP 1.85 (cM) Automated name-based View Maps
s_2FJTAR_654 SNP 0.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FJTAR_654 SNP 1.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_2FJTAR_654 SNP 0.00 (cM) Automated name-based View Maps
s_1AVZDN_454 SNP 0.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AVZDN_454 SNP 1.50 (cM) Automated name-based View Maps
s_1CHOB1_253 SNP 0.56 Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CHOB1_253 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CHOB1_253 SNP 1.50 (cM) Automated name-based View Maps
s_2F0T1P_73 SNP 1.12 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2F0T1P_73 SNP 2.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_2F0T1P_73 SNP 0.86 (cM) Automated name-based View Maps
s_1AETFA_478 SNP 1.12 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AETFA_478 SNP 2.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1AETFA_478 SNP 0.86 (cM) Automated name-based View Maps
s_2G100S_591 SNP 1.12 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2G100S_591 SNP 2.10 (cM) Automated name-based View Maps
s_2FRLHJ_122 SNP 1.12 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FRLHJ_122 SNP 2.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_2FRLHJ_122 SNP 0.86 (cM) Automated name-based View Maps
v_10208_216 SNP 1.68 Quercus robur - Genetic_x3P_2015 - LG4 v_10208_216 SNP 2.47 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_10208_216 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 v_10208_216 SNP 2.63 (cM) Automated name-based View Maps
s_2G3GM3_325 SNP 1.12 Quercus robur - Genetic_x11P2_2015 - LG4 s_2G3GM3_325 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2G3GM3_325 SNP 2.50 (cM) Automated name-based View Maps
s_1CTGJ0_718 SNP 1.68 Quercus robur - Genetic_A4_2015 - LG4 s_1CTGJ0_718 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CTGJ0_718 SNP 3.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1CTGJ0_718 SNP 3.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CTGJ0_718 SNP 2.00 (cM) Automated name-based View Maps
v_12520_283 SNP 1.68 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_12520_283 SNP 3.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 v_12520_283 SNP 2.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 v_12520_283 SNP 3.51 (cM) Automated name-based View Maps
s_1B5WK9_282 SNP 2.25 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B5WK9_282 SNP 3.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_1B5WK9_282 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1B5WK9_282 SNP 3.51 (cM) Automated name-based View Maps
s_1A3UE0_229 SNP 2.81 Quercus robur - Genetic_A4_2015 - LG4 s_1A3UE0_229 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A3UE0_229 SNP 3.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A3UE0_229 SNP 5.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1A3UE0_229 SNP 5.43 (cM) Automated name-based View Maps
s_1BKG1X_482 SNP 5.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BKG1X_482 SNP 5.80 (cM) Automated name-based View Maps
s_1DKQJR_226 SNP 5.06 Quercus robur - Genetic_x11P2_2015 - LG4 s_1DKQJR_226 SNP 5.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1DKQJR_226 SNP 5.80 (cM) Automated name-based View Maps
s_1ATJG3_762 SNP 5.62 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1ATJG3_762 SNP 6.40 (cM) Automated name-based View Maps
s_1BYS6U_888 SNP 6.18 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BYS6U_888 SNP 7.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_1BYS6U_888 SNP 2.16 (cM) Automated name-based View Maps
s_1EFHN6_1273 SNP 6.18 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1EFHN6_1273 SNP 7.00 (cM) Automated name-based View Maps
s_1B91MJ_705 SNP 7.30 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B91MJ_705 SNP 7.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1B91MJ_705 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_1B91MJ_705 SNP 2.16 (cM) Automated name-based View Maps
s_1DGCGG_507 SNP 7.30 Quercus robur - Genetic_x3P_2015 - LG4 s_1DGCGG_507 SNP 8.34 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1DGCGG_507 SNP 7.02 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1DGCGG_507 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1DGCGG_507 SNP 7.60 (cM) Automated name-based View Maps
s_1A8PHD_860 SNP 8.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A8PHD_860 SNP 8.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1A8PHD_860 SNP 11.15 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1A8PHD_860 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1A8PHD_860 SNP 8.34 (cM) Automated name-based View Maps
s_AE02GNJ2E_1298 SNP 8.43 Quercus robur - Genetic_A4_2015 - LG4 s_AE02GNJ2E_1298 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_AE02GNJ2E_1298 SNP 8.50 (cM) Automated name-based View Maps

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