CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x11P2_2015  (Reference Set)
Min. Correspondence
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Maps LG6
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x11P2_2015 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 62.37 cM
Features by Type:
97 SNP
97 Total

Map Features

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Items 1 to 25 of 97.       of 4 | Next
Quercus robur - Genetic_x11P2_2015 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A6BXG_1262 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A6BXG_1262 SNP 6.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
s_1A9JUL_720 SNP 0.88 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A9JUL_720 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A9JUL_720 SNP 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1A9JUL_720 SNP 2.16 (cM) Automated name-based View Maps
s_1A2GO9_398 SNP 2.63 Quercus robur - Genetic_x3P_2015 - LG6 s_1A2GO9_398 SNP 2.17 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A2GO9_398 SNP 6.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A2GO9_398 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2GO9_398 SNP 8.10 (cM) Automated name-based View Maps
s_1A80CS_205 SNP 2.63 Quercus robur - Genetic_x3P_2015 - LG6 s_1A80CS_205 SNP 2.17 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A80CS_205 SNP 6.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A80CS_205 SNP 8.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A80CS_205 SNP 1.69 (cM) Automated name-based View Maps
s_1A7EB7_275 SNP 2.63 Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A7EB7_275 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1A7EB7_275 SNP 3.09 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A7EB7_275 SNP 8.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A7EB7_275 SNP 3.51 (cM) Automated name-based View Maps
s_1AR3W0_401 SNP 2.63 Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AR3W0_401 SNP 1.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AR3W0_401 SNP 8.70 (cM) Automated name-based View Maps
s_1AMGZ3_323 SNP 3.51 Quercus robur - Genetic_x3P_2015 - LG6 s_1AMGZ3_323 SNP 3.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AMGZ3_323 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AMGZ3_323 SNP 9.70 (cM) Automated name-based View Maps
s_1CBM4I_782 SNP 3.51 Quercus robur - Genetic_x3P_2015 - LG6 s_1CBM4I_782 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1CBM4I_782 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1CBM4I_782 SNP 10.00 (cM) Automated name-based View Maps
s_2G4YYS_618 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2G4YYS_618 SNP 10.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_2G4YYS_618 SNP 3.93 (cM) Automated name-based View Maps
s_1AONYV_1152 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AONYV_1152 SNP 10.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AONYV_1152 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1AONYV_1152 SNP 3.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1AONYV_1152 SNP 8.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 s_1AONYV_1152 SNP 4.50 (cM) Automated name-based View Maps
s_2FFJR9_324 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2FFJR9_324 SNP 10.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_2FFJR9_324 SNP 3.93 (cM) Automated name-based View Maps
s_AE02IYKY0_267 SNP 3.51 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_AE02IYKY0_267 SNP 10.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_AE02IYKY0_267 SNP 3.14 (cM) Automated name-based View Maps
s_1DGRO9_575 SNP 7.91 Quercus robur - Genetic_x11P1_2015 - LG6 s_1DGRO9_575 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1DGRO9_575 SNP 14.40 (cM) Automated name-based View Maps
s_1A6YAW_783 SNP 7.91 Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A6YAW_783 SNP 8.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A6YAW_783 SNP 14.60 (cM) Automated name-based View Maps
v_7702_36 SNP 7.91 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_7702_36 SNP 14.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 v_7702_36 SNP 9.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_7702_36 SNP 17.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 v_7702_36 SNP 8.29 (cM) Automated name-based View Maps
s_1A1U5K_279 SNP 9.66 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A1U5K_279 SNP 14.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A1U5K_279 SNP 7.87 (cM) Automated name-based View Maps
s_1DGEVC_392 SNP 9.66 Quercus robur - Genetic_x11P1_2015 - LG6 s_1DGEVC_392 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1DGEVC_392 SNP 14.60 (cM) Automated name-based View Maps
s_1A3PWW_1214 SNP 9.66 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A3PWW_1214 SNP 7.87 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A3PWW_1214 SNP 10.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A3PWW_1214 SNP 14.60 (cM) Automated name-based View Maps
s_1APUSG_764 SNP 8.78 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1APUSG_764 SNP 14.60 (cM) Automated name-based View Maps
s_1A0WMB_1269 SNP 9.66 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A0WMB_1269 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A0WMB_1269 SNP 8.97 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A0WMB_1269 SNP 15.50 (cM) Automated name-based View Maps
s_2GSH8C_433 SNP 9.66 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2GSH8C_433 SNP 15.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_2GSH8C_433 SNP 14.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_2GSH8C_433 SNP 10.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_2GSH8C_433 SNP 8.43 (cM) Automated name-based View Maps
s_1AIIPV_1134 SNP 10.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AIIPV_1134 SNP 16.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1AIIPV_1134 SNP 11.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1AIIPV_1134 SNP 9.55 (cM) Automated name-based View Maps
s_1A2URM_1356 SNP 10.54 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A2URM_1356 SNP 9.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2URM_1356 SNP 17.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A2URM_1356 SNP 12.01 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A2URM_1356 SNP 10.51 (cM) Automated name-based View Maps
s_1A16QA_272 SNP 14.94 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A16QA_272 SNP 19.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1A16QA_272 SNP 13.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A16QA_272 SNP 11.80 (cM) Automated name-based View Maps
v_6427_262 SNP 16.69 Quercus robur - Genetic_x11P1_2015 - LG6 v_6427_262 SNP 12.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_6427_262 SNP 21.20 (cM) Automated name-based View Maps

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