CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 50.90 cM
Features by Type:
310 SNP
310 Total

Map Features

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Items 1 to 25 of 310.       of 13 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BM05L_302 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG1 s_1BM05L_302 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1BM05L_302 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BM05L_302 SNP 0.00 (cM) Automated name-based View Maps
s_1BXS0Q_1704 SNP 0.00 Quercus petraea - Genetic_Qs21_2015 - LG1 s_1BXS0Q_1704 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
s_1D8OAY_519 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
s_1A5KNH_1650 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1A5KNH_1650 SNP 0.31 (cM) Automated name-based View Maps
s_1CDSUA_1042 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
s_2G5N5L_1389 SNP 0.00 Quercus petraea - Genetic_Qs21_2015 - LG1 s_2G5N5L_1389 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_2G5N5L_1389 SNP 0.00 (cM) Automated name-based View Maps
v_12308_67 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG1 v_12308_67 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_12308_67 SNP 0.00 (cM) Automated name-based View Maps
s_1CCX65_1062 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1CCX65_1062 SNP 0.00 (cM) Automated name-based View Maps
s_AE02G5GU9_516 SNP 0.30 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_AE02G5GU9_516 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_AE02G5GU9_516 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_AE02G5GU9_516 SNP 0.57 (cM) Automated name-based View Maps
s_1A4YNB_305 SNP 0.80 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1A4YNB_305 SNP 0.00 (cM) Automated name-based View Maps
s_1A5BYK_2035 SNP 0.80 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1A5BYK_2035 SNP 0.00 (cM) Automated name-based View Maps
s_1BW7NY_508 SNP 1.10 Quercus robur - Genetic_x3P_2015 - LG1 s_1BW7NY_508 SNP 1.54 (cM) Automated name-based View Maps
s_1BY538_833 SNP 1.80 Quercus robur - Genetic_x11P1_2015 - LG1 s_1BY538_833 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BY538_833 SNP 2.16 (cM) Automated name-based View Maps
s_2IR1HL_748 SNP 1.80 Quercus robur - Genetic_x11P2_2015 - LG1 s_2IR1HL_748 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_2IR1HL_748 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_2IR1HL_748 SNP 2.16 (cM) Automated name-based View Maps
s_1AEHCS_328 SNP 1.80 Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AEHCS_328 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1AEHCS_328 SNP 2.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 s_1AEHCS_328 SNP 1.43 (cM) Automated name-based View Maps
s_1A0HOQ_452 SNP 1.80 Quercus petraea - Genetic_Qs29_2015 - LG1 s_1A0HOQ_452 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1A0HOQ_452 SNP 2.78 (cM) Automated name-based View Maps
s_1A0LGZ_1280 SNP 1.80 Quercus robur - Genetic_x11P2_2015 - LG1 s_1A0LGZ_1280 SNP 1.75 (cM) Automated name-based View Maps
s_1DFK66_275 SNP 1.80 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1DFK66_275 SNP 2.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1DFK66_275 SNP 0.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1DFK66_275 SNP 2.63 (cM) Automated name-based View Maps
v_13951_270 SNP 2.10 Quercus robur - Genetic_A4_2015 - LG1 v_13951_270 SNP 3.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 v_13951_270 SNP 1.71 (cM) Automated name-based View Maps
v_1377_170 SNP 2.40 Quercus robur - Genetic_x11P1_2015 - LG1 v_1377_170 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 v_1377_170 SNP 1.71 (cM) Automated name-based View Maps
v_7751_472 SNP 2.90 Quercus robur - Genetic_A4_2015 - LG1 v_7751_472 SNP 3.09 (cM) Automated name-based View Maps
s_1AMVCC_444 SNP 3.20 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1AMVCC_444 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1AMVCC_444 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1AMVCC_444 SNP 3.51 (cM) Automated name-based View Maps
s_1A61LZ_664 SNP 3.20 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1A61LZ_664 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A61LZ_664 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1A61LZ_664 SNP 3.40 (cM) Automated name-based View Maps
s_1AH7I_610 SNP 3.20 Quercus robur - Genetic_A4_2015 - LG1 s_1AH7I_610 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AH7I_610 SNP 4.39 (cM) Automated name-based View Maps
s_2FRE01_1332 SNP 3.20 Quercus petraea - Genetic_Qs29_2015 - LG1 s_2FRE01_1332 SNP 5.26 (cM) Automated name-based View Maps

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