CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 93.00 cM
Features by Type:
712 SNP
712 Total

Map Features

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Items 1 to 25 of 712.       of 29 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_BM7N7_371 SNP 0.60 Quercus robur - Genetic_x3P_2015 - LG2 s_BM7N7_371 SNP 0.00 (cM) Automated name-based View Maps
s_1A76ZA_1744 SNP 0.60 Quercus robur - Genetic_x11P1_2015 - LG2 s_1A76ZA_1744 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1A76ZA_1744 SNP 0.00 (cM) Automated name-based View Maps
s_1AMCLE_683 SNP 0.70 Quercus robur - Genetic_x3P_2015 - LG2 s_1AMCLE_683 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AMCLE_683 SNP 0.00 (cM) Automated name-based View Maps
s_1AJKFL_1083 SNP 0.70 Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
s_1A1P6I_674 SNP 0.70 Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1A1P6I_674 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A1P6I_674 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1A1P6I_674 SNP 0.00 (cM) Automated name-based View Maps
s_2FHH8O_315 SNP 0.70 Quercus petraea - Genetic_Qs28f_2015 - LG2 s_2FHH8O_315 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_2FHH8O_315 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_2FHH8O_315 SNP 0.00 (cM) Automated name-based View Maps
s_1B5MB_806 SNP 0.70 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1B5MB_806 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1B5MB_806 SNP 0.93 (cM) Automated name-based View Maps
v_1917_189 SNP 0.70 Quercus robur - Genetic_x11P1_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 v_1917_189 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 v_1917_189 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
s_1BOTIP_938 SNP 0.70 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BOTIP_938 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 s_1BOTIP_938 SNP 0.57 (cM) Automated name-based View Maps
s_1A91J0_954 SNP 0.70 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1A91J0_954 SNP 0.86 (cM) Automated name-based View Maps
s_1A0H35_1051 SNP 0.70 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A0H35_1051 SNP 39.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A0H35_1051 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1A0H35_1051 SNP 43.00 (cM) Automated name-based View Maps
s_1AQD6J_367 SNP 0.70 Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1AQD6J_367 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1AQD6J_367 SNP 0.56 (cM) Automated name-based View Maps
v_12046_318 SNP 0.70 Quercus petraea - Genetic_Qs29_2015 - LG2 v_12046_318 SNP 0.00 (cM) Automated name-based View Maps
s_1B624Y_536 SNP 1.00 Quercus robur - Genetic_x3P_2015 - LG2 s_1B624Y_536 SNP 0.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1B624Y_536 SNP 0.00 (cM) Automated name-based View Maps
s_2GFRR5_365 SNP 1.00 Quercus robur - Genetic_x11P1_2015 - LG2 s_2GFRR5_365 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_2GFRR5_365 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_2GFRR5_365 SNP 0.93 (cM) Automated name-based View Maps
s_1ATR24_545 SNP 1.00 Quercus robur - Genetic_A4_2015 - LG2 s_1ATR24_545 SNP 1.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1ATR24_545 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1ATR24_545 SNP 0.00 (cM) Automated name-based View Maps
s_1BZ7M7_1818 SNP 1.10 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BZ7M7_1818 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1BZ7M7_1818 SNP 2.25 (cM) Automated name-based View Maps
s_1DPB90_173 SNP 1.20 Quercus robur - Genetic_A4_2015 - LG2 s_1DPB90_173 SNP 1.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1DPB90_173 SNP 2.25 (cM) Automated name-based View Maps
s_1AEVRR_401 SNP 1.20 Quercus robur - Genetic_A4_2015 - LG2 s_1AEVRR_401 SNP 1.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AEVRR_401 SNP 0.00 (cM) Automated name-based View Maps
s_1A4VPK_728 SNP 1.30 Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A4VPK_728 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1A4VPK_728 SNP 0.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1A4VPK_728 SNP 0.29 (cM) Automated name-based View Maps
s_1AOSRF_888 SNP 1.30 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1AOSRF_888 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1AOSRF_888 SNP 0.62 (cM) Automated name-based View Maps
s_1AJXU1_45 SNP 1.50 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1AJXU1_45 SNP 1.71 (cM) Automated name-based View Maps
s_1A48U1_307 SNP 1.90 Quercus robur - Genetic_A4_2015 - LG2 s_1A48U1_307 SNP 1.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1A48U1_307 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1A48U1_307 SNP 2.63 (cM) Automated name-based View Maps
s_1A4BEL_1084 SNP 1.90 Quercus robur - Genetic_x11P1_2015 - LG2 s_1A4BEL_1084 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1A4BEL_1084 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1A4BEL_1084 SNP 1.85 (cM) Automated name-based View Maps
s_1EN7U8_1231 SNP 1.90 Quercus robur - Genetic_x11P1_2015 - LG2 s_1EN7U8_1231 SNP 0.00 (cM) Automated name-based View Maps

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