CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
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Maps LG3
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 63.20 cM
Features by Type:
302 SNP
302 Total

Map Features

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Items 1 to 25 of 302.       of 13 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1C0JZE_881 SNP 24.50 Quercus robur - Genetic_A4_2015 - LG3 s_1C0JZE_881 SNP 19.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 s_1C0JZE_881 SNP 19.30 (cM) Automated name-based View Maps
s_1A2E5Y_750 SNP 25.40 Quercus petraea - Genetic_Qs21_2015 - LG3 s_1A2E5Y_750 SNP 24.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG3 s_1A2E5Y_750 SNP 20.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1A2E5Y_750 SNP 15.74 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 s_1A2E5Y_750 SNP 20.18 (cM) Automated name-based View Maps
s_1DAE5U_342 SNP 25.50 Quercus petraea - Genetic_Qs29_2015 - LG3 s_1DAE5U_342 SNP 34.26 (cM) Automated name-based View Maps
s_1BJ166_575 SNP 25.70 Quercus petraea - Genetic_Qs29_2015 - LG3 s_1BJ166_575 SNP 34.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1BJ166_575 SNP 23.61 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG3 s_1BJ166_575 SNP 20.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG3 s_1BJ166_575 SNP 24.30 (cM) Automated name-based View Maps
s_1CHKKZ_158 SNP 25.70 Quercus petraea - Genetic_Qs21_2015 - LG3 s_1CHKKZ_158 SNP 24.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG3 s_1CHKKZ_158 SNP 20.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1CHKKZ_158 SNP 15.74 (cM) Automated name-based View Maps
s_1A9550_691 SNP 25.70 Quercus petraea - Genetic_Qs21_2015 - LG3 s_1A9550_691 SNP 24.30 (cM) Automated name-based View Maps
s_1C5K11_484 SNP 25.70 Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1C5K11_484 SNP 20.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1C5K11_484 SNP 23.61 (cM) Automated name-based View Maps
s_1A2AB4_40 SNP 25.70 Quercus robur - Genetic_A4_2015 - LG3 s_1A2AB4_40 SNP 21.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1A2AB4_40 SNP 23.61 (cM) Automated name-based View Maps
s_1ADR7U_1062 SNP 25.90 Quercus robur - Genetic_x3P_2015 - LG3 s_1ADR7U_1062 SNP 21.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1ADR7U_1062 SNP 21.15 (cM) Automated name-based View Maps
s_1CHQRZ_904 SNP 26.60 Quercus robur - Genetic_x11P2_2015 - LG3 s_1CHQRZ_904 SNP 22.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1CHQRZ_904 SNP 16.31 (cM) Automated name-based View Maps
s_1BPBT0_611 SNP 27.70 Quercus petraea - Genetic_Qs21_2015 - LG3 s_1BPBT0_611 SNP 25.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1BPBT0_611 SNP 17.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG3 s_1BPBT0_611 SNP 36.90 (cM) Automated name-based View Maps
s_1B66RW_992 SNP 27.70 Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1B66RW_992 SNP 25.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG3 s_1B66RW_992 SNP 23.78 (cM) Automated name-based View Maps
s_1A8O81_1032 SNP 28.00 Quercus petraea - Genetic_Qs29_2015 - LG3 s_1A8O81_1032 SNP 36.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 s_1A8O81_1032 SNP 22.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG3 s_1A8O81_1032 SNP 23.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG3 s_1A8O81_1032 SNP 25.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1A8O81_1032 SNP 17.99 (cM) Automated name-based View Maps
s_1A3AA5_606 SNP 28.00 Quercus robur - Genetic_A4_2015 - LG3 s_1A3AA5_606 SNP 24.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1A3AA5_606 SNP 22.86 (cM) Automated name-based View Maps
s_1CD3YS_541 SNP 28.00 Quercus robur - Genetic_x11P2_2015 - LG3 s_1CD3YS_541 SNP 22.82 (cM) Automated name-based View Maps
s_1AUAXK_317 SNP 28.00 Quercus robur - Genetic_x11P2_2015 - LG3 s_1AUAXK_317 SNP 22.82 (cM) Automated name-based View Maps
s_1BZR38_813 SNP 28.20 Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1BZR38_813 SNP 25.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG3 s_1BZR38_813 SNP 36.90 (cM) Automated name-based View Maps
s_1AM7KQ_922 SNP 29.90 Quercus petraea - Genetic_Qs29_2015 - LG3 s_1AM7KQ_922 SNP 38.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG3 s_1AM7KQ_922 SNP 27.73 (cM) Automated name-based View Maps
s_1B4LXI_418 SNP 30.50 Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1B4LXI_418 SNP 23.72 (cM) Automated name-based View Maps
s_1BBFJ_1230 SNP 30.80 Quercus robur - Genetic_x3P_2015 - LG3 s_1BBFJ_1230 SNP 25.95 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG3 s_1BBFJ_1230 SNP 39.53 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1BBFJ_1230 SNP 24.01 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1BBFJ_1230 SNP 26.42 (cM) Automated name-based View Maps
s_1DJD2Z_741 SNP 30.80 Quercus petraea - Genetic_Qs21_2015 - LG3 s_1DJD2Z_741 SNP 27.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG3 s_1DJD2Z_741 SNP 25.95 (cM) Automated name-based View Maps
v_11308_193 SNP 31.40 Quercus petraea - Genetic_Qs21_2015 - LG3 v_11308_193 SNP 28.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 v_11308_193 SNP 21.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 v_11308_193 SNP 28.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG3 v_11308_193 SNP 26.26 (cM) Automated name-based View Maps
s_1ALAEQ_1600 SNP 31.40 Quercus robur - Genetic_x3P_2015 - LG3 s_1ALAEQ_1600 SNP 26.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG3 s_1ALAEQ_1600 SNP 39.53 (cM) Automated name-based View Maps
s_1BUTS0_231 SNP 31.80 Quercus robur - Genetic_x11P1_2015 - LG3 s_1BUTS0_231 SNP 21.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG3 s_1BUTS0_231 SNP 27.80 (cM) Automated name-based View Maps
v_13237_130 SNP 31.80 Quercus robur - Genetic_A4_2015 - LG3 v_13237_130 SNP 30.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG3 v_13237_130 SNP 30.31 (cM) Automated name-based View Maps

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