CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 63.30 cM
Features by Type:
229 SNP
229 Total

Map Features

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Items 1 to 25 of 229.       of 10 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1DY96Q_819 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG4 s_1DY96Q_819 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1DY96Q_819 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1DY96Q_819 SNP 0.00 (cM) Automated name-based View Maps
s_1CCJPV_1444 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG4 s_1CCJPV_1444 SNP 0.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1CCJPV_1444 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1CCJPV_1444 SNP 0.00 (cM) Automated name-based View Maps
s_1ASQDC_778 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1ASQDC_778 SNP 0.57 (cM) Automated name-based View Maps
s_1A1QE5_1745 SNP 0.90 Quercus robur - Genetic_A4_2015 - LG4 s_1A1QE5_1745 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1A1QE5_1745 SNP 1.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1A1QE5_1745 SNP 0.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A1QE5_1745 SNP 1.12 (cM) Automated name-based View Maps
s_1CPHMB_436 SNP 0.90 Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CPHMB_436 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1CPHMB_436 SNP 0.88 (cM) Automated name-based View Maps
s_1A1FLG_563 SNP 0.90 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1A1FLG_563 SNP 2.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A1FLG_563 SNP 1.12 (cM) Automated name-based View Maps
s_EOZRA_191 SNP 1.00 Quercus robur - Genetic_x11P2_2015 - LG4 s_EOZRA_191 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_EOZRA_191 SNP 0.00 (cM) Automated name-based View Maps
s_1B54MC_944 SNP 1.20 Quercus robur - Genetic_x11P2_2015 - LG4 s_1B54MC_944 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1B54MC_944 SNP 0.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1B54MC_944 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1B54MC_944 SNP 0.93 (cM) Automated name-based View Maps
s_2H9XSI_818 SNP 1.50 Quercus petraea - Genetic_Qs28m_2015 - LG4 s_2H9XSI_818 SNP 1.69 (cM) Automated name-based View Maps
s_1AEUAK_82 SNP 1.50 Quercus robur - Genetic_x11P1_2015 - LG4 s_1AEUAK_82 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1AEUAK_82 SNP 1.85 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1AEUAK_82 SNP 0.88 (cM) Automated name-based View Maps
s_2FJTAR_654 SNP 1.50 Quercus robur - Genetic_x11P1_2015 - LG4 s_2FJTAR_654 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_2FJTAR_654 SNP 0.00 (cM) Automated name-based View Maps
s_1AVZDN_454 SNP 1.50 Quercus robur - Genetic_x11P1_2015 - LG4 s_1AVZDN_454 SNP 0.56 (cM) Automated name-based View Maps
s_1CHOB1_253 SNP 1.50 Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CHOB1_253 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1CHOB1_253 SNP 0.56 (cM) Automated name-based View Maps
s_2F0T1P_73 SNP 2.10 Quercus petraea - Genetic_Qs21_2015 - LG4 s_2F0T1P_73 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_2F0T1P_73 SNP 1.12 (cM) Automated name-based View Maps
s_1AETFA_478 SNP 2.10 Quercus robur - Genetic_x11P1_2015 - LG4 s_1AETFA_478 SNP 1.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1AETFA_478 SNP 0.86 (cM) Automated name-based View Maps
s_2G100S_591 SNP 2.10 Quercus robur - Genetic_x11P1_2015 - LG4 s_2G100S_591 SNP 1.12 (cM) Automated name-based View Maps
s_2FRLHJ_122 SNP 2.10 Quercus robur - Genetic_x11P1_2015 - LG4 s_2FRLHJ_122 SNP 1.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_2FRLHJ_122 SNP 0.86 (cM) Automated name-based View Maps
v_10353_86 SNP 2.10 Quercus robur - Genetic_x3P_2015 - LG4 v_10353_86 SNP 2.16 (cM) Automated name-based View Maps
v_10208_216 SNP 2.50 Quercus robur - Genetic_x3P_2015 - LG4 v_10208_216 SNP 2.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 v_10208_216 SNP 1.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 v_10208_216 SNP 2.63 (cM) Automated name-based View Maps
s_2G3GM3_325 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG4 s_2G3GM3_325 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_2G3GM3_325 SNP 2.63 (cM) Automated name-based View Maps
s_2F4JLS_807 SNP 2.50 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_2F4JLS_807 SNP 2.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_2F4JLS_807 SNP 2.63 (cM) Automated name-based View Maps
s_1A2U3S_1213 SNP 2.50 Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A2U3S_1213 SNP 4.50 (cM) Automated name-based View Maps
v_320_286 SNP 2.50 Quercus petraea - Genetic_Qs28f_2015 - LG4 v_320_286 SNP 4.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 v_320_286 SNP 4.50 (cM) Automated name-based View Maps
s_ARYEK_268 SNP 2.60 Quercus petraea - Genetic_Qs29_2015 - LG4 s_ARYEK_268 SNP 2.63 (cM) Automated name-based View Maps
s_2F7OY9_468 SNP 3.20 Quercus petraea - Genetic_Qs29_2015 - LG4 s_2F7OY9_468 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_2F7OY9_468 SNP 3.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_2F7OY9_468 SNP 5.62 (cM) Automated name-based View Maps

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