CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 64.40 cM
Features by Type:
300 SNP
300 Total

Map Features

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Items 1 to 25 of 300.       of 12 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AWGVW_1011 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AWGVW_1011 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AWGVW_1011 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1AWGVW_1011 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1AWGVW_1011 SNP 0.00 (cM) Automated name-based View Maps
s_1B8HOA_858 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1B8HOA_858 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1B8HOA_858 SNP 0.00 (cM) Automated name-based View Maps
v_7994_364 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG5 v_7994_364 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 v_7994_364 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 v_7994_364 SNP 0.00 (cM) Automated name-based View Maps
s_1BXLEN_519 SNP 0.20 Quercus robur - Genetic_x11P1_2015 - LG5 s_1BXLEN_519 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1BXLEN_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1BXLEN_519 SNP 0.62 (cM) Automated name-based View Maps
v_4430_151 SNP 0.30 Quercus petraea - Genetic_Qs28m_2015 - LG5 v_4430_151 SNP 0.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 v_4430_151 SNP 0.00 (cM) Automated name-based View Maps
s_1A05K9_232 SNP 0.60 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A05K9_232 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1A05K9_232 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A05K9_232 SNP 0.00 (cM) Automated name-based View Maps
v_12032_111 SNP 0.60 Quercus petraea - Genetic_Qs28f_2015 - LG5 v_12032_111 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 v_12032_111 SNP 0.00 (cM) Automated name-based View Maps
s_1AD4BS_468 SNP 1.10 Quercus robur - Genetic_A4_2015 - LG5 s_1AD4BS_468 SNP 1.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AD4BS_468 SNP 2.25 (cM) Automated name-based View Maps
v_10767_211 SNP 1.10 Quercus robur - Genetic_A4_2015 - LG5 v_10767_211 SNP 2.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 v_10767_211 SNP 0.00 (cM) Automated name-based View Maps
s_1B825D_1017 SNP 1.10 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1B825D_1017 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1B825D_1017 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1B825D_1017 SNP 1.69 (cM) Automated name-based View Maps
s_1D2YPG_755 SNP 1.10 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1D2YPG_755 SNP 0.88 (cM) Automated name-based View Maps
s_2HOO9O_335 SNP 1.20 Quercus robur - Genetic_x3P_2015 - LG5 s_2HOO9O_335 SNP 0.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2HOO9O_335 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_2HOO9O_335 SNP 1.75 (cM) Automated name-based View Maps
s_1AOM8_1080 SNP 1.70 Quercus robur - Genetic_A4_2015 - LG5 s_1AOM8_1080 SNP 3.09 (cM) Automated name-based View Maps
s_1CXIV3_324 SNP 1.70 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1CXIV3_324 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1CXIV3_324 SNP 3.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1CXIV3_324 SNP 0.57 (cM) Automated name-based View Maps
s_1A34Y1_641 SNP 1.80 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A34Y1_641 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1A34Y1_641 SNP 3.40 (cM) Automated name-based View Maps
s_1A4INM_2287 SNP 1.80 Quercus robur - Genetic_A4_2015 - LG5 s_1A4INM_2287 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1A4INM_2287 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A4INM_2287 SNP 1.75 (cM) Automated name-based View Maps
s_1B9MA7_1144 SNP 1.80 Quercus robur - Genetic_x11P2_2015 - LG5 s_1B9MA7_1144 SNP 1.75 (cM) Automated name-based View Maps
s_1AEN2Q_1654 SNP 1.80 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AEN2Q_1654 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1AEN2Q_1654 SNP 1.71 (cM) Automated name-based View Maps
s_2F4GE9_1304 SNP 2.00 Quercus robur - Genetic_x11P2_2015 - LG5 s_2F4GE9_1304 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2F4GE9_1304 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_2F4GE9_1304 SNP 1.54 (cM) Automated name-based View Maps
s_1ADZ8J_508 SNP 2.00 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1ADZ8J_508 SNP 4.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1ADZ8J_508 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1ADZ8J_508 SNP 1.14 (cM) Automated name-based View Maps
v_9437_420 SNP 2.00 Quercus robur - Genetic_x11P2_2015 - LG5 v_9437_420 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 v_9437_420 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 v_9437_420 SNP 2.81 (cM) Automated name-based View Maps
s_1AGS54_854 SNP 2.00 Quercus petraea - Genetic_Qs21_2015 - LG5 s_1AGS54_854 SNP 1.43 (cM) Automated name-based View Maps
s_1A1BBI_818 SNP 2.70 Quercus robur - Genetic_x11P1_2015 - LG5 s_1A1BBI_818 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A1BBI_818 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1A1BBI_818 SNP 4.32 (cM) Automated name-based View Maps
s_1AFB0D_1017 SNP 2.90 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1AFB0D_1017 SNP 3.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AFB0D_1017 SNP 3.37 (cM) Automated name-based View Maps
s_1AJ7K2_523 SNP 2.90 Quercus robur - Genetic_x3P_2015 - LG5 s_1AJ7K2_523 SNP 2.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AJ7K2_523 SNP 3.37 (cM) Automated name-based View Maps

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