CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 63.30 cM
Features by Type:
406 SNP
406 Total

Map Features

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Items 1 to 25 of 406.       of 17 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_2G6VU9_1078 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG6 s_2G6VU9_1078 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_2G6VU9_1078 SNP 0.00 (cM) Automated name-based View Maps
v_14061_224 SNP 0.00 Quercus petraea - Genetic_Qs21_2015 - LG6 v_14061_224 SNP 0.00 (cM) Automated name-based View Maps
v_7448_346 SNP 0.30 Quercus robur - Genetic_A4_2015 - LG6 v_7448_346 SNP 0.31 (cM) Automated name-based View Maps
v_7609_387 SNP 1.70 Quercus petraea - Genetic_Qs21_2015 - LG6 v_7609_387 SNP 0.86 (cM) Automated name-based View Maps
s_1BYW5Z_909 SNP 2.60 Quercus petraea - Genetic_Qs29_2015 - LG6 s_1BYW5Z_909 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1BYW5Z_909 SNP 0.31 (cM) Automated name-based View Maps
s_1A5ZRU_893 SNP 2.60 Quercus robur - Genetic_A4_2015 - LG6 s_1A5ZRU_893 SNP 0.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A5ZRU_893 SNP 1.71 (cM) Automated name-based View Maps
v_7315_108 SNP 2.60 Quercus petraea - Genetic_Qs29_2015 - LG6 v_7315_108 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 v_7315_108 SNP 0.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 v_7315_108 SNP 0.86 (cM) Automated name-based View Maps
v_2726_182 SNP 2.60 Quercus petraea - Genetic_Qs29_2015 - LG6 v_2726_182 SNP 0.00 (cM) Automated name-based View Maps
s_1AGVY8_1616 SNP 2.90 Quercus robur - Genetic_A4_2015 - LG6 s_1AGVY8_1616 SNP 0.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1AGVY8_1616 SNP 2.00 (cM) Automated name-based View Maps
s_1A7L00_1353 SNP 3.40 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A7L00_1353 SNP 2.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A7L00_1353 SNP 0.00 (cM) Automated name-based View Maps
s_1A88X8_1849 SNP 4.90 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A88X8_1849 SNP 3.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A88X8_1849 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1A88X8_1849 SNP 1.54 (cM) Automated name-based View Maps
s_1AVJRY_362 SNP 5.70 Quercus petraea - Genetic_Qs29_2015 - LG6 s_1AVJRY_362 SNP 1.75 (cM) Automated name-based View Maps
s_1EYOXN_545 SNP 6.00 Quercus petraea - Genetic_Qs28m_2015 - LG6 s_1EYOXN_545 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1EYOXN_545 SNP 1.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1EYOXN_545 SNP 0.00 (cM) Automated name-based View Maps
s_1AF8E5_774 SNP 6.30 Quercus robur - Genetic_A4_2015 - LG6 s_1AF8E5_774 SNP 1.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1AF8E5_774 SNP 4.57 (cM) Automated name-based View Maps
s_1A6BXG_1262 SNP 6.40 Quercus robur - Genetic_x11P2_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
s_1A4ML4_325 SNP 6.40 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A4ML4_325 SNP 4.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A4ML4_325 SNP 0.00 (cM) Automated name-based View Maps
s_1A5WAL_449 SNP 6.60 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A5WAL_449 SNP 4.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A5WAL_449 SNP 0.00 (cM) Automated name-based View Maps
s_1ESLKK_1358 SNP 6.60 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1ESLKK_1358 SNP 4.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1ESLKK_1358 SNP 0.00 (cM) Automated name-based View Maps
s_1A9O0J_1663 SNP 6.60 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A9O0J_1663 SNP 4.86 (cM) Automated name-based View Maps
s_1A9JUL_720 SNP 6.90 Quercus robur - Genetic_A4_2015 - LG6 s_1A9JUL_720 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A9JUL_720 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A9JUL_720 SNP 0.88 (cM) Automated name-based View Maps
s_1B6Y5O_342 SNP 7.50 Quercus robur - Genetic_A4_2015 - LG6 s_1B6Y5O_342 SNP 2.78 (cM) Automated name-based View Maps
v_7355_1007 SNP 7.50 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_7355_1007 SNP 45.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 v_7355_1007 SNP 48.18 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 v_7355_1007 SNP 0.00 (cM) Automated name-based View Maps
s_1A5K3F_2292 SNP 7.50 Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A5K3F_2292 SNP 0.00 (cM) Automated name-based View Maps
s_1A42MI_860 SNP 7.50 Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A42MI_860 SNP 0.29 (cM) Automated name-based View Maps
v_5030_178 SNP 7.80 Quercus robur - Genetic_x3P_2015 - LG6 v_5030_178 SNP 1.55 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 v_5030_178 SNP 0.29 (cM) Automated name-based View Maps

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