CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 55.50 cM
Features by Type:
329 SNP
329 Total

Map Features

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Items 1 to 25 of 329.       of 14 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A69R9_277 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG7 s_1A69R9_277 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1A69R9_277 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1A69R9_277 SNP 0.00 (cM) Automated name-based View Maps
s_1A0V83_194 SNP 0.90 Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1A0V83_194 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_1A0V83_194 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1A0V83_194 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1A0V83_194 SNP 0.88 (cM) Automated name-based View Maps
s_1A1W90_1264 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG7 s_1A1W90_1264 SNP 0.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1A1W90_1264 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_1A1W90_1264 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1A1W90_1264 SNP 0.56 (cM) Automated name-based View Maps
s_1AS3PF_1616 SNP 1.70 Quercus robur - Genetic_x11P1_2015 - LG7 s_1AS3PF_1616 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1AS3PF_1616 SNP 0.88 (cM) Automated name-based View Maps
s_1AEPN8_195 SNP 2.00 Quercus robur - Genetic_x3P_2015 - LG7 s_1AEPN8_195 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1AEPN8_195 SNP 1.69 (cM) Automated name-based View Maps
v_12101_526 SNP 2.30 Quercus robur - Genetic_x3P_2015 - LG7 v_12101_526 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 v_12101_526 SNP 0.00 (cM) Automated name-based View Maps
s_1AEOKC_1365 SNP 2.30 Quercus petraea - Genetic_Qs21_2015 - LG7 s_1AEOKC_1365 SNP 2.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1AEOKC_1365 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 s_1AEOKC_1365 SNP 0.00 (cM) Automated name-based View Maps
v_15652_53 SNP 2.30 Quercus robur - Genetic_x11P1_2015 - LG7 v_15652_53 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 v_15652_53 SNP 1.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 v_15652_53 SNP 0.00 (cM) Automated name-based View Maps
s_1B1T30_493 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG7 s_1B1T30_493 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1B1T30_493 SNP 1.75 (cM) Automated name-based View Maps
s_1BBCEE_805 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG7 s_1BBCEE_805 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1BBCEE_805 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1BBCEE_805 SNP 1.75 (cM) Automated name-based View Maps
s_1C5MXM_402 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG7 s_1C5MXM_402 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG7 s_1C5MXM_402 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1C5MXM_402 SNP 1.75 (cM) Automated name-based View Maps
s_1CA282_1167 SNP 2.50 Quercus robur - Genetic_x11P2_2015 - LG7 s_1CA282_1167 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1CA282_1167 SNP 2.25 (cM) Automated name-based View Maps
s_1ALDAI_707 SNP 3.10 Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1ALDAI_707 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1ALDAI_707 SNP 0.57 (cM) Automated name-based View Maps
v_11316_311 SNP 3.10 Quercus petraea - Genetic_Qs28m_2015 - LG7 v_11316_311 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 v_11316_311 SNP 0.57 (cM) Automated name-based View Maps
s_1B690L_558 SNP 3.10 Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1B690L_558 SNP 0.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1B690L_558 SNP 0.00 (cM) Automated name-based View Maps
s_1B0QYE_217 SNP 3.10 Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1B0QYE_217 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1B0QYE_217 SNP 0.57 (cM) Automated name-based View Maps
s_1ARTR9_777 SNP 3.10 Quercus petraea - Genetic_Qs29_2015 - LG7 s_1ARTR9_777 SNP 0.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1ARTR9_777 SNP 0.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1ARTR9_777 SNP 0.56 (cM) Automated name-based View Maps
s_1A2FYJ_520 SNP 4.20 Quercus robur - Genetic_x11P2_2015 - LG7 s_1A2FYJ_520 SNP 1.75 (cM) Automated name-based View Maps
s_1B6SDN_193 SNP 4.20 Quercus petraea - Genetic_Qs29_2015 - LG7 s_1B6SDN_193 SNP 2.63 (cM) Automated name-based View Maps
s_1B0GT0_1302 SNP 4.30 Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1B0GT0_1302 SNP 0.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1B0GT0_1302 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 s_1B0GT0_1302 SNP 0.00 (cM) Automated name-based View Maps
s_1APXX5_250 SNP 4.30 Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1APXX5_250 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1APXX5_250 SNP 0.86 (cM) Automated name-based View Maps
s_1A9QT2_1542 SNP 4.30 Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1A9QT2_1542 SNP 0.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1A9QT2_1542 SNP 1.69 (cM) Automated name-based View Maps
s_1DUHWL_492 SNP 4.40 Quercus robur - Genetic_x3P_2015 - LG7 s_1DUHWL_492 SNP 1.85 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1DUHWL_492 SNP 5.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1DUHWL_492 SNP 1.75 (cM) Automated name-based View Maps
s_1B3GKZ_458 SNP 4.40 Quercus robur - Genetic_x11P2_2015 - LG7 s_1B3GKZ_458 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1B3GKZ_458 SNP 5.63 (cM) Automated name-based View Maps
s_1AT434_305 SNP 4.80 Quercus petraea - Genetic_Qs28f_2015 - LG7 s_1AT434_305 SNP 1.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1AT434_305 SNP 1.69 (cM) Automated name-based View Maps

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