CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 67.10 cM
Features by Type:
437 SNP
437 Total

Map Features

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Items 1 to 25 of 437.       of 18 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BP3PG_1228 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG8 s_1BP3PG_1228 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG8 s_1BP3PG_1228 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG8 s_1BP3PG_1228 SNP 0.00 (cM) Automated name-based View Maps
s_1A5JU2_890 SNP 0.10 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1A5JU2_890 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG8 s_1A5JU2_890 SNP 0.00 (cM) Automated name-based View Maps
s_1A9STZ_1334 SNP 2.70 Quercus petraea - Genetic_Qs28m_2015 - LG8 s_1A9STZ_1334 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1A9STZ_1334 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG8 s_1A9STZ_1334 SNP 0.00 (cM) Automated name-based View Maps
s_1A0PF4_181 SNP 2.70 Quercus robur - Genetic_x3P_2015 - LG8 s_1A0PF4_181 SNP 0.00 (cM) Automated name-based View Maps
s_1B42XL_1085 SNP 2.70 Quercus robur - Genetic_x11P1_2015 - LG8 s_1B42XL_1085 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG8 s_1B42XL_1085 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG8 s_1B42XL_1085 SNP 0.31 (cM) Automated name-based View Maps
s_2H2SBE_749 SNP 2.70 Quercus robur - Genetic_x11P2_2015 - LG8 s_2H2SBE_749 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG8 s_2H2SBE_749 SNP 1.54 (cM) Automated name-based View Maps
s_1A4BE3_203 SNP 2.70 Quercus petraea - Genetic_Qs29_2015 - LG8 s_1A4BE3_203 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG8 s_1A4BE3_203 SNP 1.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG8 s_1A4BE3_203 SNP 3.43 (cM) Automated name-based View Maps
s_1AZGHZ_1356 SNP 2.70 Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1AZGHZ_1356 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG8 s_1AZGHZ_1356 SNP 1.75 (cM) Automated name-based View Maps
s_1BNA10_750 SNP 2.70 Quercus petraea - Genetic_Qs29_2015 - LG8 s_1BNA10_750 SNP 1.75 (cM) Automated name-based View Maps
s_1BU08Z_593 SNP 3.30 Quercus robur - Genetic_A4_2015 - LG8 s_1BU08Z_593 SNP 2.47 (cM) Automated name-based View Maps
s_1BI3YZ_478 SNP 3.60 Quercus robur - Genetic_A4_2015 - LG8 s_1BI3YZ_478 SNP 2.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG8 s_1BI3YZ_478 SNP 2.25 (cM) Automated name-based View Maps
s_1ANOLO_478 SNP 4.10 Quercus petraea - Genetic_Qs21_2015 - LG8 s_1ANOLO_478 SNP 4.86 (cM) Automated name-based View Maps
s_AE01CHF9N_1577 SNP 4.20 Quercus robur - Genetic_x11P2_2015 - LG8 s_AE01CHF9N_1577 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG8 s_AE01CHF9N_1577 SNP 1.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 s_AE01CHF9N_1577 SNP 2.00 (cM) Automated name-based View Maps
s_1BIGJD_1518 SNP 4.20 Quercus robur - Genetic_x11P1_2015 - LG8 s_1BIGJD_1518 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG8 s_1BIGJD_1518 SNP 1.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG8 s_1BIGJD_1518 SNP 3.51 (cM) Automated name-based View Maps
s_1AEXZQ_163 SNP 4.20 Quercus robur - Genetic_x3P_2015 - LG8 s_1AEXZQ_163 SNP 1.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1AEXZQ_163 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG8 s_1AEXZQ_163 SNP 3.51 (cM) Automated name-based View Maps
s_AE02HBBZC_489 SNP 4.60 Quercus robur - Genetic_x3P_2015 - LG8 s_AE02HBBZC_489 SNP 1.85 (cM) Automated name-based View Maps
s_1A5A4Q_171 SNP 4.90 Quercus robur - Genetic_x11P2_2015 - LG8 s_1A5A4Q_171 SNP 3.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG8 s_1A5A4Q_171 SNP 4.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG8 s_1A5A4Q_171 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG8 s_1A5A4Q_171 SNP 2.81 (cM) Automated name-based View Maps
s_1A0AYU_873 SNP 4.90 Quercus robur - Genetic_x11P2_2015 - LG8 s_1A0AYU_873 SNP 3.51 (cM) Automated name-based View Maps
s_B4BNJ_667 SNP 4.90 Quercus robur - Genetic_x11P2_2015 - LG8 s_B4BNJ_667 SNP 3.51 (cM) Automated name-based View Maps
s_1BJOL9_183 SNP 4.90 Quercus robur - Genetic_x11P2_2015 - LG8 s_1BJOL9_183 SNP 3.51 (cM) Automated name-based View Maps
s_1ADUKG_70 SNP 4.90 Quercus robur - Genetic_x11P2_2015 - LG8 s_1ADUKG_70 SNP 3.51 (cM) Automated name-based View Maps
s_1C4IQ4_1508 SNP 5.00 Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1C4IQ4_1508 SNP 4.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG8 s_1C4IQ4_1508 SNP 3.51 (cM) Automated name-based View Maps
v_1388_115 SNP 5.00 Quercus robur - Genetic_x11P2_2015 - LG8 v_1388_115 SNP 3.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 v_1388_115 SNP 4.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG8 v_1388_115 SNP 2.25 (cM) Automated name-based View Maps
s_1AKBC7_1090 SNP 5.00 Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1AKBC7_1090 SNP 3.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG8 s_1AKBC7_1090 SNP 2.25 (cM) Automated name-based View Maps
s_1A240P_1328 SNP 5.00 Quercus petraea - Genetic_Qs28m_2015 - LG8 s_1A240P_1328 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG8 s_1A240P_1328 SNP 5.43 (cM) Automated name-based View Maps

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