CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 57.50 cM
Features by Type:
299 SNP
299 Total

Map Features

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Items 1 to 25 of 299.       of 12 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_2F28T4_553 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG9 s_2F28T4_553 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_2F28T4_553 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_2F28T4_553 SNP 0.00 (cM) Automated name-based View Maps
s_2F1PMY_384 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
s_1EDNWY_103 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG9 s_1EDNWY_103 SNP 0.00 (cM) Automated name-based View Maps
s_1A7LD7_894 SNP 0.30 Quercus robur - Genetic_x3P_2015 - LG9 s_1A7LD7_894 SNP 0.31 (cM) Automated name-based View Maps
s_1AE5MB_75 SNP 0.60 Quercus robur - Genetic_A4_2015 - LG9 s_1AE5MB_75 SNP 0.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AE5MB_75 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1AE5MB_75 SNP 1.12 (cM) Automated name-based View Maps
s_1CFSVB_865 SNP 0.60 Quercus robur - Genetic_x11P2_2015 - LG9 s_1CFSVB_865 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1CFSVB_865 SNP 0.62 (cM) Automated name-based View Maps
s_1C1GRV_1289 SNP 0.90 Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1C1GRV_1289 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1C1GRV_1289 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_1C1GRV_1289 SNP 0.93 (cM) Automated name-based View Maps
s_1A6EDZ_1597 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG9 s_1A6EDZ_1597 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_1A6EDZ_1597 SNP 1.24 (cM) Automated name-based View Maps
s_2G4L3Y_96 SNP 0.90 Quercus petraea - Genetic_Qs28m_2015 - LG9 s_2G4L3Y_96 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_2G4L3Y_96 SNP 0.00 (cM) Automated name-based View Maps
s_1AKZ04_2142 SNP 1.10 Quercus robur - Genetic_x11P1_2015 - LG9 s_1AKZ04_2142 SNP 1.12 (cM) Automated name-based View Maps
s_1BMVJV_1221 SNP 1.50 Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1BMVJV_1221 SNP 0.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1BMVJV_1221 SNP 0.57 (cM) Automated name-based View Maps
s_1A5MNV_316 SNP 1.50 Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1A5MNV_316 SNP 0.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1A5MNV_316 SNP 0.57 (cM) Automated name-based View Maps
s_1A4X34_1309 SNP 1.50 Quercus robur - Genetic_x11P2_2015 - LG9 s_1A4X34_1309 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1A4X34_1309 SNP 1.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1A4X34_1309 SNP 1.69 (cM) Automated name-based View Maps
s_1DNJ9J_1006 SNP 1.70 Quercus robur - Genetic_x11P2_2015 - LG9 s_1DNJ9J_1006 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_1DNJ9J_1006 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1DNJ9J_1006 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG9 s_1DNJ9J_1006 SNP 3.43 (cM) Automated name-based View Maps
s_1B0S44_444 SNP 1.70 Quercus robur - Genetic_x11P2_2015 - LG2 s_1B0S44_444 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1B0S44_444 SNP 1.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_1B0S44_444 SNP 3.40 (cM) Automated name-based View Maps
s_1AZOU2_773 SNP 1.70 Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1AZOU2_773 SNP 0.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AZOU2_773 SNP 0.88 (cM) Automated name-based View Maps
s_1B8SH7_1040 SNP 2.00 Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1B8SH7_1040 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1B8SH7_1040 SNP 2.16 (cM) Automated name-based View Maps
s_1A8WLX_1145 SNP 2.00 Quercus robur - Genetic_x11P2_2015 - LG9 s_1A8WLX_1145 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1A8WLX_1145 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1A8WLX_1145 SNP 2.16 (cM) Automated name-based View Maps
s_1AUOYU_390 SNP 2.10 Quercus robur - Genetic_x11P1_2015 - LG9 s_1AUOYU_390 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_1AUOYU_390 SNP 4.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AUOYU_390 SNP 0.88 (cM) Automated name-based View Maps
s_2F0SQ3_1625 SNP 2.10 Quercus petraea - Genetic_Qs28m_2015 - LG9 s_2F0SQ3_1625 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_2F0SQ3_1625 SNP 6.48 (cM) Automated name-based View Maps
s_1BMHTY_862 SNP 2.10 Quercus robur - Genetic_x11P1_2015 - LG9 s_1BMHTY_862 SNP 2.25 (cM) Automated name-based View Maps
s_1B95KZ_324 SNP 2.20 Quercus robur - Genetic_A4_2015 - LG9 s_1B95KZ_324 SNP 2.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG9 s_1B95KZ_324 SNP 0.00 (cM) Automated name-based View Maps
s_2JHD8L_1003 SNP 3.20 Quercus petraea - Genetic_Qs21_2015 - LG9 s_2JHD8L_1003 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_2JHD8L_1003 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_2JHD8L_1003 SNP 6.48 (cM) Automated name-based View Maps
s_1BRF38_1690 SNP 3.60 Quercus robur - Genetic_A4_2015 - LG9 s_1BRF38_1690 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1BRF38_1690 SNP 2.63 (cM) Automated name-based View Maps
s_1D293I_504 SNP 3.70 Quercus robur - Genetic_x3P_2015 - LG9 s_1D293I_504 SNP 6.48 (cM) Automated name-based View Maps

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