CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG10
Map Start: 0.00 cM
Map Stop: 57.80 cM
Features by Type:
289 SNP
289 Total

Map Features

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Items 1 to 25 of 289.       of 12 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1APHBW_422 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1APHBW_422 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG10 s_1APHBW_422 SNP 0.00 (cM) Automated name-based View Maps
s_1AJ2TD_828 SNP 0.00 Quercus petraea - Genetic_Qs21_2015 - LG10 s_1AJ2TD_828 SNP 0.00 (cM) Automated name-based View Maps
v_13197_167 SNP 0.60 Quercus robur - Genetic_x3P_2015 - LG10 v_13197_167 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 v_13197_167 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG10 v_13197_167 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 v_13197_167 SNP 0.00 (cM) Automated name-based View Maps
s_1A0UNW_1062 SNP 0.60 Quercus robur - Genetic_x11P2_2015 - LG10 s_1A0UNW_1062 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 s_1A0UNW_1062 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG10 s_1A0UNW_1062 SNP 0.00 (cM) Automated name-based View Maps
s_1EAJWS_1081 SNP 0.60 Quercus robur - Genetic_x3P_2015 - LG10 s_1EAJWS_1081 SNP 0.00 (cM) Automated name-based View Maps
s_1DID0F_368 SNP 0.60 Quercus robur - Genetic_A4_2015 - LG10 s_1DID0F_368 SNP 0.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 s_1DID0F_368 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG10 s_1DID0F_368 SNP 0.00 (cM) Automated name-based View Maps
s_1D2IQZ_2217 SNP 0.60 Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1D2IQZ_2217 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG10 s_1D2IQZ_2217 SNP 0.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1D2IQZ_2217 SNP 0.00 (cM) Automated name-based View Maps
s_1CEHG2_1135 SNP 0.60 Quercus robur - Genetic_A4_2015 - LG10 s_1CEHG2_1135 SNP 0.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1CEHG2_1135 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG10 s_1CEHG2_1135 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG10 s_1CEHG2_1135 SNP 0.56 (cM) Automated name-based View Maps
s_1ATBLZ_633 SNP 0.60 Quercus robur - Genetic_x11P2_2015 - LG10 s_1ATBLZ_633 SNP 0.00 (cM) Automated name-based View Maps
s_1BLPON_648 SNP 0.60 Quercus robur - Genetic_x11P2_2015 - LG10 s_1BLPON_648 SNP 0.00 (cM) Automated name-based View Maps
s_2FG4W7_651 SNP 0.60 Quercus petraea - Genetic_Qs28f_2015 - LG10 s_2FG4W7_651 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG10 s_2FG4W7_651 SNP 0.00 (cM) Automated name-based View Maps
s_1D1BYU_661 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG10 s_1D1BYU_661 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1D1BYU_661 SNP 0.00 (cM) Automated name-based View Maps
s_1A17QG_1669 SNP 0.90 Quercus robur - Genetic_A4_2015 - LG10 s_1A17QG_1669 SNP 1.24 (cM) Automated name-based View Maps
s_1BO83W_1238 SNP 0.90 Quercus robur - Genetic_A4_2015 - LG10 s_1BO83W_1238 SNP 1.85 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1BO83W_1238 SNP 0.00 (cM) Automated name-based View Maps
s_1AF1T8_626 SNP 0.90 Quercus petraea - Genetic_Qs21_2015 - LG10 s_1AF1T8_626 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 s_1AF1T8_626 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1AF1T8_626 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG10 s_1AF1T8_626 SNP 1.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG10 s_1AF1T8_626 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1AF1T8_626 SNP 0.00 (cM) Automated name-based View Maps
s_1AX9L0_268 SNP 1.10 Quercus petraea - Genetic_Qs28m_2015 - LG10 s_1AX9L0_268 SNP 1.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1AX9L0_268 SNP 0.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG10 s_1AX9L0_268 SNP 1.75 (cM) Automated name-based View Maps
s_1CKYIU_1670 SNP 1.20 Quercus robur - Genetic_x3P_2015 - LG10 s_1CKYIU_1670 SNP 0.62 (cM) Automated name-based View Maps
s_1AEYOE_201 SNP 1.20 Quercus robur - Genetic_x11P1_2015 - LG10 s_1AEYOE_201 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG10 s_1AEYOE_201 SNP 0.62 (cM) Automated name-based View Maps
s_1A9HO7_191 SNP 1.50 Quercus petraea - Genetic_Qs28f_2015 - LG10 s_1A9HO7_191 SNP 0.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG10 s_1A9HO7_191 SNP 1.68 (cM) Automated name-based View Maps
s_1AI7TR_497 SNP 1.80 Quercus robur - Genetic_A4_2015 - LG10 s_1AI7TR_497 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 s_1AI7TR_497 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1AI7TR_497 SNP 0.00 (cM) Automated name-based View Maps
s_AP7PO_499 SNP 2.60 Quercus robur - Genetic_x11P2_2015 - LG10 s_AP7PO_499 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG10 s_AP7PO_499 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 s_AP7PO_499 SNP 3.37 (cM) Automated name-based View Maps
s_1A6CK6_610 SNP 3.20 Quercus petraea - Genetic_Qs29_2015 - LG10 s_1A6CK6_610 SNP 4.39 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG10 s_1A6CK6_610 SNP 2.57 (cM) Automated name-based View Maps
s_1B1YZY_447 SNP 3.80 Quercus robur - Genetic_x3P_2015 - LG10 s_1B1YZY_447 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG10 s_1B1YZY_447 SNP 3.14 (cM) Automated name-based View Maps
s_1BTCU5_1260 SNP 3.80 Quercus petraea - Genetic_Qs21_2015 - LG10 s_1BTCU5_1260 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG10 s_1BTCU5_1260 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG10 s_1BTCU5_1260 SNP 4.39 (cM) Automated name-based View Maps
s_1AL45E_1261 SNP 3.80 Quercus petraea - Genetic_Qs29_2015 - LG10 s_1AL45E_1261 SNP 4.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG10 s_1AL45E_1261 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG10 s_1AL45E_1261 SNP 3.93 (cM) Automated name-based View Maps

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