CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 53.50 cM
Features by Type:
298 SNP
298 Total

Map Features

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Items 1 to 25 of 298.       of 12 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_10277_482 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG11 v_10277_482 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG11 v_10277_482 SNP 0.00 (cM) Automated name-based View Maps
v_6216_1046 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_6216_1046 SNP 0.00 (cM) Automated name-based View Maps
s_1A6RPG_1145 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1A6RPG_1145 SNP 0.00 (cM) Automated name-based View Maps
s_1A760C_1586 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1A760C_1586 SNP 0.86 (cM) Automated name-based View Maps
s_1A8M6H_1298 SNP 0.20 Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1A8M6H_1298 SNP 1.14 (cM) Automated name-based View Maps
v_1962_125 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG11 v_1962_125 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_1962_125 SNP 0.00 (cM) Automated name-based View Maps
s_1AVXI6_1763 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG11 s_1AVXI6_1763 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1AVXI6_1763 SNP 0.00 (cM) Automated name-based View Maps
s_2H0BL6_797 SNP 0.90 Quercus robur - Genetic_x11P1_2015 - LG11 s_2H0BL6_797 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_2H0BL6_797 SNP 0.00 (cM) Automated name-based View Maps
s_1CQ2O5_1067 SNP 0.90 Quercus robur - Genetic_x11P1_2015 - LG11 s_1CQ2O5_1067 SNP 0.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 s_1CQ2O5_1067 SNP 0.00 (cM) Automated name-based View Maps
s_1AU8KO_909 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG11 s_1AU8KO_909 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AU8KO_909 SNP 34.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1AU8KO_909 SNP 35.44 (cM) Automated name-based View Maps
s_2GEU7N_426 SNP 0.90 Quercus robur - Genetic_x11P2_2015 - LG11 s_2GEU7N_426 SNP 0.88 (cM) Automated name-based View Maps
v_6423_343 SNP 1.20 Quercus robur - Genetic_x3P_2015 - LG11 v_6423_343 SNP 0.00 (cM) Automated name-based View Maps
v_14239_147 SNP 1.50 Quercus robur - Genetic_x3P_2015 - LG11 v_14239_147 SNP 0.31 (cM) Automated name-based View Maps
v_5397_188 SNP 1.60 Quercus robur - Genetic_x11P1_2015 - LG11 v_5397_188 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 v_5397_188 SNP 2.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_5397_188 SNP 1.75 (cM) Automated name-based View Maps
s_1ELHFI_365 SNP 1.60 Quercus robur - Genetic_x11P1_2015 - LG11 s_1ELHFI_365 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 s_1ELHFI_365 SNP 0.57 (cM) Automated name-based View Maps
v_5398_481 SNP 1.60 Quercus petraea - Genetic_Qs21_2015 - LG11 v_5398_481 SNP 0.57 (cM) Automated name-based View Maps
v_828_328 SNP 2.50 Quercus robur - Genetic_x11P2_2015 - LG11 v_828_328 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 v_828_328 SNP 2.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_828_328 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_828_328 SNP 1.24 (cM) Automated name-based View Maps
v_7306_139 SNP 2.50 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_7306_139 SNP 3.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 v_7306_139 SNP 0.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_7306_139 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_7306_139 SNP 1.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_7306_139 SNP 3.51 (cM) Automated name-based View Maps
s_2GFYZ3_113 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG11 s_2GFYZ3_113 SNP 3.37 (cM) Automated name-based View Maps
s_1BSZHM_661 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG11 s_1BSZHM_661 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 s_1BSZHM_661 SNP 0.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1BSZHM_661 SNP 2.63 (cM) Automated name-based View Maps
s_AZJIH_286 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG11 s_AZJIH_286 SNP 3.37 (cM) Automated name-based View Maps
v_6724_152 SNP 2.50 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_6724_152 SNP 4.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_6724_152 SNP 3.93 (cM) Automated name-based View Maps
v_4371_407 SNP 2.50 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_4371_407 SNP 4.29 (cM) Automated name-based View Maps
s_1APKMM_1127 SNP 2.50 Quercus robur - Genetic_x11P1_2015 - LG11 s_1APKMM_1127 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 s_1APKMM_1127 SNP 3.40 (cM) Automated name-based View Maps
s_1ALWXN_902 SNP 2.50 Quercus robur - Genetic_A4_2015 - LG11 s_1ALWXN_902 SNP 3.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1ALWXN_902 SNP 4.29 (cM) Automated name-based View Maps

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