CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_Quercus_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 52.80 cM
Features by Type:
350 SNP
350 Total

Map Features

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Items 1 to 25 of 350.       of 14 | Next
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_4510_423 SNP 16.80 Quercus petraea - Genetic_Qs28f_2015 - LG12 v_4510_423 SNP 15.73 (cM) Automated name-based View Maps
s_1AS3QH_356 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG12 s_1AS3QH_356 SNP 0.00 (cM) Automated name-based View Maps
s_1A3Y7L_454 SNP 0.20 Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1A3Y7L_454 SNP 0.00 (cM) Automated name-based View Maps
v_2185_158 SNP 0.50 Quercus petraea - Genetic_Qs28f_2015 - LG12 v_2185_158 SNP 0.29 (cM) Automated name-based View Maps
s_1A63EI_2068 SNP 1.10 Quercus robur - Genetic_x11P2_2015 - LG12 s_1A63EI_2068 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 s_1A63EI_2068 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1A63EI_2068 SNP 0.00 (cM) Automated name-based View Maps
s_AXE9X_268 SNP 1.10 Quercus robur - Genetic_x11P1_2015 - LG12 s_AXE9X_268 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 s_AXE9X_268 SNP 0.00 (cM) Automated name-based View Maps
s_1AFHOM_409 SNP 1.90 Quercus petraea - Genetic_Qs29_2015 - LG12 s_1AFHOM_409 SNP 0.00 (cM) Automated name-based View Maps
s_1A0H8N_113 SNP 2.20 Quercus robur - Genetic_x3P_2015 - LG12 s_1A0H8N_113 SNP 0.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1A0H8N_113 SNP 1.12 (cM) Automated name-based View Maps
s_1CTJ3J_556 SNP 3.10 Quercus robur - Genetic_x3P_2015 - LG12 s_1CTJ3J_556 SNP 1.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1CTJ3J_556 SNP 0.00 (cM) Automated name-based View Maps
s_1ATY_575 SNP 3.40 Quercus robur - Genetic_x3P_2015 - LG12 s_1ATY_575 SNP 1.54 (cM) Automated name-based View Maps
s_1AX9P8_943 SNP 3.40 Quercus robur - Genetic_x3P_2015 - LG12 s_1AX9P8_943 SNP 1.54 (cM) Automated name-based View Maps
s_2HQOUK_864 SNP 3.70 Quercus robur - Genetic_A4_2015 - LG12 s_2HQOUK_864 SNP 3.71 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2HQOUK_864 SNP 0.56 (cM) Automated name-based View Maps
s_1AGEGO_1029 SNP 3.70 Quercus petraea - Genetic_Qs29_2015 - LG12 s_1AGEGO_1029 SNP 1.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1AGEGO_1029 SNP 0.56 (cM) Automated name-based View Maps
s_1C3PSV_1041 SNP 3.70 Quercus robur - Genetic_A4_2015 - LG12 s_1C3PSV_1041 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1C3PSV_1041 SNP 2.63 (cM) Automated name-based View Maps
s_2HO1U2_202 SNP 3.70 Quercus robur - Genetic_A4_2015 - LG12 s_2HO1U2_202 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_2HO1U2_202 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_2HO1U2_202 SNP 1.69 (cM) Automated name-based View Maps
s_1A0K59_1448 SNP 3.70 Quercus robur - Genetic_x3P_2015 - LG12 s_1A0K59_1448 SNP 1.85 (cM) Automated name-based View Maps
s_1A87WX_1060 SNP 4.10 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1A87WX_1060 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 s_1A87WX_1060 SNP 2.16 (cM) Automated name-based View Maps
s_1AUY7L_1085 SNP 4.60 Quercus robur - Genetic_x11P2_2015 - LG12 s_1AUY7L_1085 SNP 3.51 (cM) Automated name-based View Maps
s_1DUNMR_768 SNP 5.40 Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1DUNMR_768 SNP 5.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1DUNMR_768 SNP 2.25 (cM) Automated name-based View Maps
s_1ATPEW_563 SNP 5.80 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1ATPEW_563 SNP 1.72 (cM) Automated name-based View Maps
v_4694_276 SNP 6.20 Quercus petraea - Genetic_Qs21_2015 - LG12 v_4694_276 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 v_4694_276 SNP 4.32 (cM) Automated name-based View Maps
s_1AIUTD_1152 SNP 6.20 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1AIUTD_1152 SNP 2.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_1AIUTD_1152 SNP 7.04 (cM) Automated name-based View Maps
v_9305_242 SNP 6.20 Quercus petraea - Genetic_Qs29_2015 - LG12 v_9305_242 SNP 7.92 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 v_9305_242 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG12 v_9305_242 SNP 6.01 (cM) Automated name-based View Maps
s_1BIM5_1157 SNP 6.20 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1BIM5_1157 SNP 2.00 (cM) Automated name-based View Maps
s_2F20KC_1356 SNP 6.50 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2F20KC_1356 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG12 s_2F20KC_1356 SNP 4.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_2F20KC_1356 SNP 8.79 (cM) Automated name-based View Maps

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