CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2007  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1M
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
eSSR
EST
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2007 [ View Map Set Info ]
Map Name: LG1M
Map Start: 0.00 cM
Map Stop: 75.32 cM
Features by Type:
3 AFLP
3 EST
1 RAPD
5 eSSR
2 gSSR
14 Total

Map Features

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Items 1 to 14 of 14.
Quercus robur - Genetic_3PxA4_2007 - LG1M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQR74 gSSR 75.32 Quercus robur - Genetic_3PxA4_2009 - LG1F ZQR74 gSSR 16.89 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG1F ZQR74 gSSR 49.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1M ZQR74 gSSR 8.59 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa ZQR74 gSSR 10.85 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1F ZQR74 gSSR 19.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 ZQR74 gSSR 20.83 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1F ZQR74 gSSR 27.78 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F ZQR74 gSSR 28.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1F ZQR74 gSSR 49.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F ZQR74 gSSR 71.66 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1M ZQR74 gSSR 10.13 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F ZQR74 gSSR 71.66 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F ZQR74 gSSR 15.28 (cM) Automated name-based View Maps
*E-AAC/M-CCT-311/5 AFLP 0.00 Quercus robur - Genetic_3PxA4_2009 - LG1M *E-AAC/M-CCT-311/5 AFLP 74.89 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1M *E-AAC/M-CCT-311/5 AFLP 60.77 (cM) Automated name-based View Maps
*E-AAG/M-CAC-314/1 AFLP 39.70 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1M *E-AAG/M-CAC-314/1 AFLP 27.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1M *E-AAG/M-CAC-314/1 AFLP 31.81 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1M *E-AAG/M-CAC-314/1 AFLP 27.60 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1M *E-AAG/M-CAC-314/1 AFLP 27.60 (cM) Automated name-based View Maps
*E-AAC/M-CAC-229/2 AFLP 75.32 No other positions
POR002 eSSR 0.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1M POR002 eSSR 14.66 (cM) Automated name-based View Maps
GOT017 eSSR 29.99 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12M GOT017 eSSR 67.84 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12M GOT017 eSSR 67.84 (cM) Automated name-based View Maps
FIR039 eSSR 29.99 No other positions
GOT025 eSSR 75.32 Quercus robur - Genetic_3PxA4_2007 - LG1F GOT025 eSSR 33.04 (cM) Automated name-based View Maps
GOT011 eSSR 75.32 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F GOT011 eSSR 58.87 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F GOT011 eSSR 58.87 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1M GOT011 eSSR 65.79 (cM) Automated name-based View Maps
APX EST 75.32 Quercus robur - Genetic_3PxA4_2007 - LG1F APX EST 43.00 (cM) Automated name-based View Maps
CL4 EST 75.32 No other positions
CL41 EST 75.32 No other positions
*R14-500/3 RAPD 11.31 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1M *R14-500/3 RAPD 48.60 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1M *R14-500/3 RAPD 48.60 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1M *R14-500/3 RAPD 48.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1M *R14-500/3 RAPD 50.43 (cM) Automated name-based View Maps
PQRu6 gSSR 75.32 Castanea sativa - Genetic_BursaxHoppa_2009 - LG6F PQRu6 gSSR 45.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa PQRu6 gSSR 13.54 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6M PQRu6 gSSR 34.43 (cM) Automated name-based View Maps

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