CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2007  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6F
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
gSSR
SCAR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2007 [ View Map Set Info ]
Map Name: LG6F
Map Start: 0.00 cM
Map Stop: 98.82 cM
Features by Type:
3 gSSR
1 SCAR
4 AFLP
8 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Quercus robur - Genetic_3PxA4_2007 - LG6F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*E-AAC/M-CTT-217/1 AFLP 0.00 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F *E-AAC/M-CTT-217/1 AFLP 82.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F *E-AAC/M-CTT-217/1 AFLP 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F *E-AAC/M-CTT-217/1 AFLP 82.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F *E-AAC/M-CTT-217/1 AFLP 82.70 (cM) Automated name-based View Maps
*E-AAC/M-CAA-339 AFLP 47.19 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F *E-AAC/M-CAA-339 AFLP 31.37 (cM) Automated name-based View Maps
*E-AAC/M-CAA-75/5 AFLP 64.69 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F *E-AAC/M-CAA-75/5 AFLP 23.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F *E-AAC/M-CAA-75/5 AFLP 23.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F *E-AAC/M-CAA-75/5 AFLP 44.10 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F *E-AAC/M-CAA-75/5 AFLP 23.40 (cM) Automated name-based View Maps
*E-AAG/M-CTT-415 AFLP 72.97 No other positions
*B11-1500 SCAR 98.82 Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F *B11-1500 SCAR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F *B11-1500 SCAR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F *B11-1500 SCAR 0.00 (cM) Automated name-based View Maps
ZQR5 gSSR 16.30 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F ZQR5 gSSR 17.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F ZQR5 gSSR 40.99 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8M ZQR5 gSSR 43.21 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Ma ZQR5 gSSR 24.30 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8M ZQR5 gSSR 43.21 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F ZQR5 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8F ZQR5 gSSR 72.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M ZQR5 gSSR 41.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8F ZQR5 gSSR 14.10 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8F ZQR5 gSSR 72.57 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG2F ZQR5 gSSR 92.10 (cM) Automated name-based View Maps
CQM13 gSSR 35.48 Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 CQM13 gSSR 42.11 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M CQM13 gSSR 40.20 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F CQM13 gSSR 32.47 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M CQM13 gSSR 39.76 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F CQM13 gSSR 28.93 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M CQM13 gSSR 39.69 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F CQM13 gSSR 24.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M CQM13 gSSR 25.42 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 CQM13 gSSR 29.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M CQM13 gSSR 56.52 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M CQM13 gSSR 33.56 (cM) Automated name-based View Maps
ZQP64 gSSR 53.40 Quercus robur - Genetic_3PxA4_2009 - LG6F ZQP64 gSSR 15.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F ZQP64 gSSR 8.64 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M ZQP64 gSSR 15.46 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQP64 gSSR 36.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M ZQP64 gSSR 76.36 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M ZQP64 gSSR 52.24 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M ZQP64 gSSR 15.85 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps

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