CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2007  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2007 [ View Map Set Info ]
Map Name: LG8F
Map Start: 0.00 cM
Map Stop: 39.69 cM
Features by Type:
3 AFLP
1 EST
2 RAPD
2 gSSR
8 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Quercus robur - Genetic_3PxA4_2007 - LG8F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQR5a gSSR 15.73 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8F ZQR5a gSSR 20.40 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8M ZQR5a gSSR 58.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8M ZQR5a gSSR 58.10 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8M ZQR5a gSSR 58.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG8M ZQR5a gSSR 17.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG8F ZQR5a gSSR 42.02 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG8M ZQR5a gSSR 58.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8M ZQR5a gSSR 38.43 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG8M ZQR5a gSSR 58.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG8F ZQR5a gSSR 20.40 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8F ZQR5a gSSR 15.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG8 ZQR5a gSSR 33.47 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG8F ZQR5a gSSR 59.98 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8M ZQR5a gSSR 58.10 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8F ZQR5a gSSR 20.40 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8F ZQR5a gSSR 20.40 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG8M ZQR5a gSSR 21.92 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG8M ZQR5a gSSR 60.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG8M ZQR5a gSSR 72.67 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8F ZQR5a gSSR 20.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG8 ZQR5a gSSR 18.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG8M ZQR5a gSSR 0.00 (cM) Automated name-based View Maps
*E-AAC/M-CAA-200 AFLP 0.00 No other positions
*P-CAG/M-GCA-166 AFLP 27.37 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8F *P-CAG/M-GCA-166 AFLP 10.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8F *P-CAG/M-GCA-166 AFLP 10.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8F *P-CAG/M-GCA-166 AFLP 10.00 (cM) Automated name-based View Maps
*E-AAC/M-CCT-172/5 AFLP 3.57 No other positions
C2H4resp EST 15.73 Quercus robur - Genetic_3PxA4_2007 - LG8M C2H4resp EST 72.67 (cM) Automated name-based View Maps
*J12-550/3 RAPD 31.11 No other positions
*A18-1100/3 RAPD 35.47 No other positions
ZQP110 gSSR 39.69 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8F ZQP110 gSSR 6.58 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG8M ZQP110 gSSR 86.47 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG8F ZQP110 gSSR 11.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG8 ZQP110 gSSR 18.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG8M ZQP110 gSSR 135.58 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG8M ZQP110 gSSR 5.58 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8F ZQP110 gSSR 7.57 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG8F ZQP110 gSSR 48.04 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG7F ZQP110 gSSR 36.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8M ZQP110 gSSR 77.29 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG8M ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG8 ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG8F ZQP110 gSSR 47.57 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Ma ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8M ZQP110 gSSR 77.29 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG7F ZQP110 gSSR 52.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps

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