CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2007  (Reference Set)
Min. Correspondence
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Stack
Maps LG11F
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
eSSR
EST
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2007 [ View Map Set Info ]
Map Name: LG11F
Map Start: 0.00 cM
Map Stop: 119.75 cM
Features by Type:
8 AFLP
1 EST
1 RAPD
10 eSSR
2 gSSR
22 Total

Map Features

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Items 1 to 22 of 22.
Quercus robur - Genetic_3PxA4_2007 - LG11F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQR111 gSSR 20.33 Quercus robur - MultiQTL_3PxA4_2009_Debour - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG11M ZQR111 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F ZQR111 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG11M ZQR111 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11M ZQR111 gSSR 23.77 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG11M ZQR111 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11M ZQR111 gSSR 40.45 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fa ZQR111 gSSR 16.03 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11M ZQR111 gSSR 33.43 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F ZQR111 gSSR 16.94 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 ZQR111 gSSR 49.12 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG11M ZQR111 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F ZQR111 gSSR 18.05 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG11M ZQR111 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG11M ZQR111 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1M ZQR111 gSSR 13.59 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Mb ZQR111 gSSR 7.30 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG11F ZQR111 gSSR 17.70 (cM) Automated name-based View Maps
*E-AAC/M-CTT-296/3 AFLP 0.00 Quercus robur - MultiQTL_3PxA4_2009_Debour - LG11F *E-AAC/M-CTT-296/3 AFLP 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG11F *E-AAC/M-CTT-296/3 AFLP 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG11F *E-AAC/M-CTT-296/3 AFLP 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F *E-AAC/M-CTT-296/3 AFLP 0.00 (cM) Automated name-based View Maps
*P-CAG/M-GCA-208 AFLP 107.20 No other positions
*E-AAG/M-CAC-62/3 AFLP 30.38 No other positions
GOT035 eSSR 20.33 No other positions
*E-AAG/M-CAC-262/1 AFLP 51.58 No other positions
*E-AAG/M-CTT-217 AFLP 68.03 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F *E-AAG/M-CTT-217 AFLP 39.31 (cM) Automated name-based View Maps
*P-CAG/M-CAA-56 AFLP 74.04 No other positions
*E-AAG/M-CTA-144 AFLP 84.90 Quercus robur - Genetic_3PxA4_2009 - LG11F *E-AAG/M-CTA-144 AFLP 33.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F *E-AAG/M-CTA-144 AFLP 49.99 (cM) Automated name-based View Maps
*E-AAG/M-CTA-70/3 AFLP 98.38 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG11F *E-AAG/M-CTA-70/3 AFLP 63.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG11F *E-AAG/M-CTA-70/3 AFLP 63.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F *E-AAG/M-CTA-70/3 AFLP 61.79 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG11F *E-AAG/M-CTA-70/3 AFLP 63.00 (cM) Automated name-based View Maps
PIE275 eSSR 20.33 Quercus robur - Genetic_3PxA4_2007 - LG11M PIE275 eSSR 33.43 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11M PIE275 eSSR 79.63 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11M PIE275 eSSR 79.63 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11F PIE275 eSSR 78.73 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11F PIE275 eSSR 78.73 (cM) Automated name-based View Maps
PIE202 eSSR 20.33 Quercus robur - Genetic_3PxA4_2007 - LG11M PIE202 eSSR 33.43 (cM) Automated name-based View Maps
PIE250 eSSR 20.33 No other positions
FIR031 eSSR 20.33 Quercus robur - Genetic_3PxA4_2007 - LG11M FIR031 eSSR 33.43 (cM) Automated name-based View Maps
PIE144 eSSR 20.33 Quercus robur - Genetic_3PxA4_2007 - LG11M PIE144 eSSR 25.61 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11M PIE144 eSSR 94.84 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11M PIE144 eSSR 94.84 (cM) Automated name-based View Maps
FIR104 eSSR 68.03 No other positions
PIE102 eSSR 84.90 Quercus robur - Genetic_3PxA4_2007 - LG11M PIE102 eSSR 90.89 (cM) Automated name-based View Maps
PIE004 eSSR 98.38 No other positions
PIE033 eSSR 98.38 Quercus robur - Genetic_3PxA4_2007 - LG11M PIE033 eSSR 79.94 (cM) Automated name-based View Maps
CL78 EST 84.90 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F CL78 EST 54.01 (cM) Automated name-based View Maps
*N13-600/3 RAPD 60.30 No other positions
ZQR18 gSSR 119.75 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M ZQR18 gSSR 68.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb ZQR18 gSSR 25.89 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F ZQR18 gSSR 41.06 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb ZQR18 gSSR 8.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa ZQR18 gSSR 8.49 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F ZQR18 gSSR 9.36 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb ZQR18 gSSR 8.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11M ZQR18 gSSR 90.89 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Ma ZQR18 gSSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b ZQR18 gSSR 11.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 ZQR18 gSSR 6.61 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps

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