CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2007  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
eSSR
EST
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2007 [ View Map Set Info ]
Map Name: LG12F
Map Start: 0.00 cM
Map Stop: 86.16 cM
Features by Type:
1 AFLP
1 EST
5 RAPD
7 eSSR
1 gSSR
15 Total

Map Features

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Items 1 to 15 of 15.
Quercus robur - Genetic_3PxA4_2007 - LG12F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQR112 gSSR 18.79 Quercus robur - Genetic_AltFxAltM_2009 - LG12F ZQR112 gSSR 5.98 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG12F ZQR112 gSSR 26.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12F ZQR112 gSSR 18.88 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG12M ZQR112 gSSR 18.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12F ZQR112 gSSR 43.79 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12F ZQR112 gSSR 25.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 ZQR112 gSSR 38.08 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG12F ZQR112 gSSR 45.07 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG12F ZQR112 gSSR 32.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG12F ZQR112 gSSR 32.40 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12F ZQR112 gSSR 25.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
*P-CAG/M-GCA-122 AFLP 0.00 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG12F *P-CAG/M-GCA-122 AFLP 49.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG12F *P-CAG/M-GCA-122 AFLP 59.69 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG12F *P-CAG/M-GCA-122 AFLP 49.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG12F *P-CAG/M-GCA-122 AFLP 49.50 (cM) Automated name-based View Maps
FIR059 eSSR 0.00 Quercus robur - Genetic_3PxA4_2007 - LG12M FIR059 eSSR 0.00 (cM) Automated name-based View Maps
GOT054 eSSR 18.79 No other positions
PIE236 eSSR 18.79 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12M PIE236 eSSR 33.86 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12F PIE236 eSSR 35.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG12M PIE236 eSSR 65.13 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12M PIE236 eSSR 33.86 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12F PIE236 eSSR 35.32 (cM) Automated name-based View Maps
GOT032 eSSR 18.79 No other positions
PIE039 eSSR 81.10 Quercus robur - Genetic_3PxA4_2007 - LG12M PIE039 eSSR 52.57 (cM) Automated name-based View Maps
GOT014 eSSR 86.16 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12M GOT014 eSSR 61.34 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12M GOT014 eSSR 61.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG12M GOT014 eSSR 65.13 (cM) Automated name-based View Maps
FIR008 eSSR 86.16 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12F FIR008 eSSR 64.33 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12M FIR008 eSSR 59.31 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12F FIR008 eSSR 64.33 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12M FIR008 eSSR 59.31 (cM) Automated name-based View Maps
S06E01 EST 0.00 No other positions
*U19-300/2 RAPD 29.63 Quercus robur - Genetic_3PxA4_2009 - LG12F *U19-300/2 RAPD 38.96 (cM) Automated name-based View Maps
*R4-900/2 RAPD 49.58 Quercus robur - Genetic_3PxA4_2009 - LG12F *R4-900/2 RAPD 31.61 (cM) Automated name-based View Maps
*N9-550/2 RAPD 59.90 Quercus robur - Genetic_3PxA4_2009 - LG12F *N9-550/2 RAPD 27.86 (cM) Automated name-based View Maps
*A10-1000/3 RAPD 81.10 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG12F *A10-1000/3 RAPD 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG12F *A10-1000/3 RAPD 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG12F *A10-1000/3 RAPD 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG12F *A10-1000/3 RAPD 12.79 (cM) Automated name-based View Maps
*I10-1300/3 RAPD 86.16 No other positions

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