CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2007  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6M
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
eSSR
EST
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2007 [ View Map Set Info ]
Map Name: LG6M
Map Start: 0.00 cM
Map Stop: 76.36 cM
Features by Type:
3 AFLP
1 EST
1 RAPD
4 eSSR
3 gSSR
12 Total

Map Features

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Items 1 to 12 of 12.
Quercus robur - Genetic_3PxA4_2007 - LG6M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*E-AAC/M-CAA-49/3 AFLP 12.86 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M *E-AAC/M-CAA-49/3 AFLP 9.45 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M *E-AAC/M-CAA-49/3 AFLP 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M *E-AAC/M-CAA-49/3 AFLP 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M *E-AAC/M-CAA-49/3 AFLP 0.00 (cM) Automated name-based View Maps
*E-AAG/M-CTA-528 AFLP 29.38 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M *E-AAG/M-CTA-528 AFLP 14.60 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M *E-AAG/M-CTA-528 AFLP 14.60 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M *E-AAG/M-CTA-528 AFLP 14.60 (cM) Automated name-based View Maps
*E-AAC/M-CTT-142/5 AFLP 41.85 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M *E-AAC/M-CTT-142/5 AFLP 26.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M *E-AAC/M-CTT-142/5 AFLP 26.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M *E-AAC/M-CTT-142/5 AFLP 29.61 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M *E-AAC/M-CTT-142/5 AFLP 26.00 (cM) Automated name-based View Maps
WAG018 eSSR 12.86 No other positions
GOT040 eSSR 12.86 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG6F GOT040 eSSR 10.70 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG6M GOT040 eSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG6M GOT040 eSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG6F GOT040 eSSR 10.70 (cM) Automated name-based View Maps
PIE035 eSSR 41.85 No other positions
FIR110 eSSR 41.85 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG6F FIR110 eSSR 45.08 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG6F FIR110 eSSR 45.08 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG6M FIR110 eSSR 24.18 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG6M FIR110 eSSR 24.18 (cM) Automated name-based View Maps
CL38 EST 12.86 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M CL38 EST 7.67 (cM) Automated name-based View Maps
*Y11-300/2 RAPD 0.00 No other positions
ZQR5 gSSR 41.85 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8F ZQR5 gSSR 72.57 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8M ZQR5 gSSR 43.21 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F ZQR5 gSSR 40.99 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F ZQR5 gSSR 17.77 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F ZQR5 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F ZQR5 gSSR 16.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Ma ZQR5 gSSR 24.30 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG2F ZQR5 gSSR 92.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8F ZQR5 gSSR 14.10 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8F ZQR5 gSSR 72.57 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8M ZQR5 gSSR 43.21 (cM) Automated name-based View Maps
CQM13 gSSR 56.52 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M CQM13 gSSR 33.56 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F CQM13 gSSR 35.48 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M CQM13 gSSR 39.69 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F CQM13 gSSR 28.93 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F CQM13 gSSR 24.89 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 CQM13 gSSR 42.11 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M CQM13 gSSR 39.76 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 CQM13 gSSR 29.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F CQM13 gSSR 32.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M CQM13 gSSR 25.42 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M CQM13 gSSR 40.20 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
ZQP64 gSSR 76.36 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M ZQP64 gSSR 52.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F ZQP64 gSSR 8.64 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M ZQP64 gSSR 15.85 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQP64 gSSR 36.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M ZQP64 gSSR 15.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F ZQP64 gSSR 53.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F ZQP64 gSSR 15.88 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps

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