CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
eSSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 [ View Map Set Info ]
Map Name: LG1M
Map Start: 0.00 cM
Map Stop: 74.09 cM
Features by Type:
9 eSSR
1 gSSR
5 AFLP
15 Total

Map Features

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Items 1 to 15 of 15.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR040 eSSR 0.00 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F FIR040 eSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F FIR040 eSSR 0.00 (cM) Automated name-based View Maps
POR002 eSSR 14.66 Quercus robur - Genetic_3PxA4_2007 - LG1M POR002 eSSR 0.00 (cM) Automated name-based View Maps
PIE043 eSSR 17.21 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F PIE043 eSSR 1.88 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F PIE043 eSSR 1.88 (cM) Automated name-based View Maps
E42/M74_182 AFLP 31.26 No other positions
POR040 eSSR 33.73 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F POR040 eSSR 35.19 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F POR040 eSSR 35.19 (cM) Automated name-based View Maps
P13/M66_239a AFLP 33.93 No other positions
GOT009 eSSR 35.61 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F GOT009 eSSR 30.85 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F GOT009 eSSR 30.85 (cM) Automated name-based View Maps
E38/M74_292 AFLP 38.91 No other positions
P14/M68_260 AFLP 42.49 No other positions
PIE238 eSSR 46.99 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F PIE238 eSSR 41.15 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F PIE238 eSSR 41.15 (cM) Automated name-based View Maps
PIE238a eSSR 47.05 No other positions
E38/M74_172 AFLP 58.90 No other positions
GOT011 eSSR 65.79 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F GOT011 eSSR 58.87 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F GOT011 eSSR 58.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1M GOT011 eSSR 75.32 (cM) Automated name-based View Maps
PIE020 eSSR 70.81 No other positions
ZQR101 gSSR 74.09 Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M ZQR101 gSSR 46.18 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG1F ZQR101 gSSR 69.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1F ZQR101 gSSR 27.78 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F ZQR101 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F ZQR101 gSSR 67.76 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F ZQR101 gSSR 3.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1F ZQR101 gSSR 50.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F ZQR101 gSSR 1.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 ZQR101 gSSR 1.33 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1F ZQR101 gSSR 69.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M ZQR101 gSSR 68.89 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F ZQR101 gSSR 33.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG1F ZQR101 gSSR 49.79 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 ZQR101 gSSR 27.41 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F ZQR101 gSSR 67.76 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa ZQR101 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG1F ZQR101 gSSR 0.00 (cM) Automated name-based View Maps

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