CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28xQs21_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2Ma
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28xQs21_2009 [ View Map Set Info ]
Map Name: LG2Ma
Map Start: 0.00 cM
Map Stop: 24.72 cM
Features by Type:
1 gSSR
7 EST_SSR
8 Total

Map Features

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Items 1 to 8 of 8.
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Ma
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE241 EST_SSR 0.00 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M PIE241 EST_SSR 67.91 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Mb PIE241 EST_SSR 34.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2M PIE241 EST_SSR 47.11 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE241 EST_SSR 39.96 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F PIE241 EST_SSR 45.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 PIE241 EST_SSR 27.91 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 PIE241 EST_SSR 61.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F PIE241 EST_SSR 23.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 PIE241 EST_SSR 82.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa PIE241 EST_SSR 10.59 (cM) Automated name-based View Maps
PIE271 EST_SSR 7.43 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M PIE271 EST_SSR 76.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa PIE271 EST_SSR 7.15 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2M PIE271 EST_SSR 21.05 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Mb PIE271 EST_SSR 31.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2F PIE271 EST_SSR 21.47 (cM) Automated name-based View Maps
ZQR7 gSSR 7.63 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M ZQR7 gSSR 75.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2F ZQR7 gSSR 21.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Mb ZQR7 gSSR 29.83 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F ZQR7 gSSR 49.05 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 ZQR7 gSSR 90.88 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG1M ZQR7 gSSR 25.09 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG2M ZQR7 gSSR 122.99 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2M ZQR7 gSSR 52.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG2F ZQR7 gSSR 100.95 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 ZQR7 gSSR 29.84 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa ZQR7 gSSR 5.15 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2F ZQR7 gSSR 25.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2M ZQR7 gSSR 24.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 ZQR7 gSSR 65.24 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG2F ZQR7 gSSR 24.03 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG1F ZQR7 gSSR 9.01 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG1F ZQR7 gSSR 43.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG2F ZQR7 gSSR 17.10 (cM) Automated name-based View Maps
PIE265 EST_SSR 13.12 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M PIE265 EST_SSR 77.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE265 EST_SSR 47.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2F PIE265 EST_SSR 14.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F PIE265 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE265 EST_SSR 49.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 PIE265 EST_SSR 23.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa PIE265 EST_SSR 16.28 (cM) Automated name-based View Maps
POR023 EST_SSR 13.30 Quercus robur - Genetic_Robur_Consensus_2011 - LG2 POR023 EST_SSR 25.55 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M POR023 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 POR023 EST_SSR 67.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa POR023 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Mb POR023 EST_SSR 21.98 (cM) Automated name-based View Maps
PIE258 EST_SSR 14.71 Quercus robur - Genetic_3PxA4_2009 - LG2M PIE258 EST_SSR 19.40 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F PIE258 EST_SSR 19.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE258 EST_SSR 53.23 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Mb PIE258 EST_SSR 20.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2F PIE258 EST_SSR 12.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2F PIE258 EST_SSR 16.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Mb PIE258 EST_SSR 23.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 PIE258 EST_SSR 98.63 (cM) Automated name-based View Maps
VIT020 EST_SSR 21.17 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 VIT020 EST_SSR 104.42 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F VIT020 EST_SSR 54.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F VIT020 EST_SSR 53.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 VIT020 EST_SSR 69.77 (cM) Automated name-based View Maps
PIE150 EST_SSR 24.72 Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE150 EST_SSR 56.44 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2F PIE150 EST_SSR 7.21 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F PIE150 EST_SSR 57.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Mb PIE150 EST_SSR 11.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 PIE150 EST_SSR 72.82 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 PIE150 EST_SSR 108.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2F PIE150 EST_SSR 5.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa PIE150 EST_SSR 21.82 (cM) Automated name-based View Maps

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