CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
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Maps LG1M
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SNP
EST_SSR
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG1M
Map Start: 0.00 cM
Map Stop: 86.68 cM
Features by Type:
2 RAPD
4 EST_SSR
1 gSSR
1 EST_SNP
2 AFLP
10 Total

Map Features

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Items 1 to 10 of 10.
Quercus robur - Genetic_3PxA4_2009 - LG1M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*N19-2200/2 RAPD 0.00 No other positions
*N7-1700/3 RAPD 6.18 No other positions
ZQR74 gSSR 10.13 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1F ZQR74 gSSR 19.28 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F ZQR74 gSSR 16.89 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F ZQR74 gSSR 71.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F ZQR74 gSSR 15.28 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG1F ZQR74 gSSR 49.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1F ZQR74 gSSR 27.78 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 ZQR74 gSSR 20.83 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F ZQR74 gSSR 71.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1M ZQR74 gSSR 75.32 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F ZQR74 gSSR 28.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1F ZQR74 gSSR 48.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa ZQR74 gSSR 10.85 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1F ZQR74 gSSR 49.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1M ZQR74 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1M ZQR74 gSSR 8.59 (cM) Automated name-based View Maps
GOT025 EST_SSR 12.03 Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M GOT025 EST_SSR 46.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1M GOT025 EST_SSR 46.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1F GOT025 EST_SSR 50.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F GOT025 EST_SSR 19.67 (cM) Automated name-based View Maps
*P-CCA/M-CAA-111 AFLP 25.14 No other positions
GOT017 EST_SSR 47.36 Quercus robur - Genetic_3PxA4_2011 - LG1M GOT017 EST_SSR 52.11 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa GOT017 EST_SSR 33.61 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12M GOT017 EST_SSR 2.18 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 GOT017 EST_SSR 27.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F GOT017 EST_SSR 31.96 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M GOT017 EST_SSR 24.64 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F GOT017 EST_SSR 29.61 (cM) Automated name-based View Maps
EST15YN2 EST_SNP 56.98 Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M EST15YN2 EST_SNP 15.09 (cM) Automated name-based View Maps
*E-AAC/M-CCT-311/5 AFLP 74.89 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG1M *E-AAC/M-CCT-311/5 AFLP 60.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1M *E-AAC/M-CCT-311/5 AFLP 0.00 (cM) Automated name-based View Maps
POR002 EST_SSR 81.56 Quercus robur - Genetic_3PxA4_2011 - LG1M POR002 EST_SSR 4.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 POR002 EST_SSR 71.65 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6F POR002 EST_SSR 28.84 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F POR002 EST_SSR 56.02 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M POR002 EST_SSR 11.09 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F POR002 EST_SSR 4.68 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6M POR002 EST_SSR 8.37 (cM) Automated name-based View Maps
WAG011 EST_SSR 86.68 Quercus robur - Genetic_Robur_Consensus_2011 - LG1 WAG011 EST_SSR 75.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fb WAG011 EST_SSR 7.74 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1M WAG011 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M WAG011 EST_SSR 50.49 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1M WAG011 EST_SSR 1.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 WAG011 EST_SSR 53.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F WAG011 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F WAG011 EST_SSR 55.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M WAG011 EST_SSR 1.81 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F WAG011 EST_SSR 60.87 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F WAG011 EST_SSR 59.13 (cM) Automated name-based View Maps

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