CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3M
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG3M
Map Start: 0.00 cM
Map Stop: 98.91 cM
Features by Type:
2 RAPD
1 gSSR
9 EST_SSR
12 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Quercus robur - Genetic_3PxA4_2009 - LG3M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR004 EST_SSR 0.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3F FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG11F FIR004 EST_SSR 15.59 (cM) Automated name-based View Maps
FIR051 EST_SSR 11.29 Quercus robur - Genetic_3PxA4_2009 - LG3F FIR051 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma FIR051 EST_SSR 10.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 FIR051 EST_SSR 11.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa FIR051 EST_SSR 9.14 (cM) Automated name-based View Maps
PIE135 EST_SSR 14.04 Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE135 EST_SSR 0.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3M PIE135 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE135 EST_SSR 67.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE135 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE135 EST_SSR 64.76 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE135 EST_SSR 13.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE135 EST_SSR 12.70 (cM) Automated name-based View Maps
FIR047 EST_SSR 25.54 Quercus robur - Genetic_3PxA4_2011 - LG3Ma FIR047 EST_SSR 25.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG3F FIR047 EST_SSR 4.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG3F FIR047 EST_SSR 22.09 (cM) Automated name-based View Maps
ZQR102 gSSR 29.60 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG3F ZQR102 gSSR 71.65 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG3M ZQR102 gSSR 17.30 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma ZQR102 gSSR 29.02 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3F ZQR102 gSSR 17.71 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG3M ZQR102 gSSR 20.80 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG3M ZQR102 gSSR 21.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG3M ZQR102 gSSR 17.30 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG3M ZQR102 gSSR 20.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG3F ZQR102 gSSR 71.65 (cM) Automated name-based View Maps
GOT021 EST_SSR 39.43 Quercus robur - Genetic_3PxA4_2011 - LG3Ma GOT021 EST_SSR 39.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 GOT021 EST_SSR 27.92 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F GOT021 EST_SSR 29.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa GOT021 EST_SSR 24.73 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M GOT021 EST_SSR 41.27 (cM) Automated name-based View Maps
PIE267 EST_SSR 50.16 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE267 EST_SSR 26.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE267 EST_SSR 53.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE267 EST_SSR 26.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE267 EST_SSR 34.21 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3M PIE267 EST_SSR 39.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG3F PIE267 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE267 EST_SSR 37.77 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3F PIE267 EST_SSR 23.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE267 EST_SSR 41.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG3F PIE267 EST_SSR 27.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb PIE267 EST_SSR 22.91 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE267 EST_SSR 39.42 (cM) Automated name-based View Maps
PIE163 EST_SSR 53.68 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 PIE163 EST_SSR 81.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE163 EST_SSR 50.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE163 EST_SSR 36.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE163 EST_SSR 30.92 (cM) Automated name-based View Maps
*G4-800/2 RAPD 62.17 No other positions
*Z11-800/2 RAPD 77.38 No other positions
PIE159 EST_SSR 87.14 No other positions
POR032 EST_SSR 98.91 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG3M POR032 EST_SSR 71.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3F POR032 EST_SSR 53.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb POR032 EST_SSR 20.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 POR032 EST_SSR 81.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa POR032 EST_SSR 65.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Mb POR032 EST_SSR 32.08 (cM) Automated name-based View Maps

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