CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
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Maps LG4F
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG4F
Map Start: 0.00 cM
Map Stop: 74.79 cM
Features by Type:
4 RAPD
1 gSSR
7 EST_SSR
3 AFLP
15 Total

Map Features

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Items 1 to 15 of 15.
Quercus robur - Genetic_3PxA4_2009 - LG4F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Por013 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG4M POR013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Mb POR013 EST_SSR 9.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG4F POR013 EST_SSR 31.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG4 POR013 EST_SSR 10.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG4F POR013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG4F POR013 EST_SSR 34.21 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG4 POR013 EST_SSR 62.34 (cM) Automated name-based View Maps
POR029 EST_SSR 7.79 Quercus robur - Genetic_3PxA4_2011 - LG4F POR029 EST_SSR 6.68 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG4F POR029 EST_SSR 47.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Mb POR029 EST_SSR 9.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG4M POR029 EST_SSR 2.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG4M POR029 EST_SSR 3.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG4 POR029 EST_SSR 60.08 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Fb POR029 EST_SSR 10.05 (cM) Automated name-based View Maps
*P-CAG/M-GCA-49 AFLP 16.18 No other positions
*T174-650/1* RAPD 19.19 No other positions
*N19-950/2 RAPD 25.36 No other positions
PIE228 EST_SSR 31.96 Quercus robur - Genetic_3PxA4_2011 - LG4M PIE228 EST_SSR 21.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG4 PIE228 EST_SSR 38.31 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F PIE228 EST_SSR 9.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG4F PIE228 EST_SSR 24.42 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2M PIE228 EST_SSR 24.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG4M PIE228 EST_SSR 17.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG4F PIE228 EST_SSR 28.12 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG4F PIE228 EST_SSR 23.15 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG4F PIE228 EST_SSR 34.05 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG4F PIE228 EST_SSR 34.55 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG4M PIE228 EST_SSR 22.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG4 PIE228 EST_SSR 20.11 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG4Fa PIE228 EST_SSR 37.30 (cM) Automated name-based View Maps
PIE216 EST_SSR 38.77 Quercus robur - Genetic_3PxA4_2009 - LG4M PIE216 EST_SSR 38.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG4 PIE216 EST_SSR 25.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG4M PIE216 EST_SSR 39.65 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG4M PIE216 EST_SSR 5.88 (cM) Automated name-based View Maps
*E-AAC/M-CCT-210/5 AFLP 44.70 Quercus robur - MultiQTL_3PxA4_2009_Debour - LG4F *E-AAC/M-CCT-210/5 AFLP 50.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG4F *E-AAC/M-CCT-210/5 AFLP 40.38 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG4F *E-AAC/M-CCT-210/5 AFLP 50.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG4F *E-AAC/M-CCT-210/5 AFLP 63.37 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG4F *E-AAC/M-CCT-210/5 AFLP 50.40 (cM) Automated name-based View Maps
*E-AAC/M-CTT-246 AFLP 51.78 No other positions
PIE078 EST_SSR 53.73 Quercus robur - Genetic_Robur_Consensus_2011 - LG4 PIE078 EST_SSR 17.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG4F PIE078 EST_SSR 49.04 (cM) Automated name-based View Maps
PIE188 EST_SSR 58.06 Quercus robur - Genetic_3PxA4_2011 - LG4F PIE188 EST_SSR 52.54 (cM) Automated name-based View Maps
PIE183 EST_SSR 59.26 Quercus robur - Genetic_3PxA4_2011 - LG4F PIE183 EST_SSR 54.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG4 PIE183 EST_SSR 13.83 (cM) Automated name-based View Maps
CQM4 gSSR 62.05 Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG4Mb CQM4 gSSR 15.48 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG4M CQM4 gSSR 41.76 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG4M CQM4 gSSR 57.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG4Mb CQM4 gSSR 13.80 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG4M CQM4 gSSR 69.43 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG4F CQM4 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG4M CQM4 gSSR 57.20 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG4M CQM4 gSSR 57.30 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG4M CQM4 gSSR 57.30 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG4F CQM4 gSSR 71.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG4F CQM4 gSSR 89.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG4F CQM4 gSSR 55.84 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG4M CQM4 gSSR 57.30 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG4M CQM4 gSSR 57.30 (cM) Automated name-based View Maps
*U19-2200/2 RAPD 71.78 No other positions
*R3-500/3 RAPD 74.79 No other positions

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