CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



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 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
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Maps LG5M
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSCP
EST_SSR
gSSR
RAPD
rDNA
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
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Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG5M
Map Start: 0.00 cM
Map Stop: 102.99 cM
Features by Type:
1 EST_SSCP
1 rDNA
3 RAPD
2 gSSR
4 EST_SSR
2 AFLP
13 Total

Map Features

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Items 1 to 13 of 13.
Quercus robur - Genetic_3PxA4_2009 - LG5M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*X20-1000/2 RAPD 0.00 No other positions
*E-AAC/M-CCT-69/5 AFLP 9.29 Quercus robur - Genetic_3PxA4_2007 - LG5M *E-AAC/M-CCT-69/5 AFLP 87.54 (cM) Automated name-based View Maps
PIE201 EST_SSR 18.93 Quercus robur - Genetic_3PxA4_2011 - LG5Fb PIE201 EST_SSR 26.32 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M PIE201 EST_SSR 79.02 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F PIE201 EST_SSR 19.96 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F PIE201 EST_SSR 10.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 PIE201 EST_SSR 63.07 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Ma PIE201 EST_SSR 1.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F PIE201 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma PIE201 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE201 EST_SSR 14.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Ma PIE201 EST_SSR 6.96 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG5F PIE201 EST_SSR 37.57 (cM) Automated name-based View Maps
PIE246 EST_SSR 27.27 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PIE246 EST_SSR 17.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE246 EST_SSR 20.55 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F PIE246 EST_SSR 18.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma PIE246 EST_SSR 8.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fb PIE246 EST_SSR 23.97 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M PIE246 EST_SSR 77.92 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Mb PIE246 EST_SSR 14.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Mb PIE246 EST_SSR 1.27 (cM) Automated name-based View Maps
FIR053 EST_SSR 36.95 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M FIR053 EST_SSR 35.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa FIR053 EST_SSR 29.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma FIR053 EST_SSR 14.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F FIR053 EST_SSR 49.39 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F FIR053 EST_SSR 42.63 (cM) Automated name-based View Maps
ZQR73 gSSR 45.41 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5M ZQR73 gSSR 68.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5F ZQR73 gSSR 5.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma ZQR73 gSSR 19.95 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma ZQR73 gSSR 24.59 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5F ZQR73 gSSR 18.55 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M ZQR73 gSSR 28.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F ZQR73 gSSR 53.51 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5M ZQR73 gSSR 33.26 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F ZQR73 gSSR 47.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 ZQR73 gSSR 40.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5M ZQR73 gSSR 33.10 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5F ZQR73 gSSR 62.02 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5M ZQR73 gSSR 28.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5F ZQR73 gSSR 62.02 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5M ZQR73 gSSR 68.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F ZQR73 gSSR 39.48 (cM) Automated name-based View Maps
5SA rDNA 57.22 No other positions
*T174-500/3 RAPD 63.04 No other positions
S07A09 EST_SSCP 71.54 No other positions
ZQP58 gSSR 84.68 Castanea sativa - Genetic_BursaxHoppa_2009 - LG4M ZQP58 gSSR 22.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma ZQP58 gSSR 5.86 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5M ZQP58 gSSR 101.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5F ZQP58 gSSR 97.11 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5M ZQP58 gSSR 101.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5F ZQP58 gSSR 6.36 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5F ZQP58 gSSR 8.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG10M ZQP58 gSSR 96.83 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F ZQP58 gSSR 67.38 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5F ZQP58 gSSR 97.11 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F ZQP58 gSSR 71.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F ZQP58 gSSR 36.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa ZQP58 gSSR 24.38 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M ZQP58 gSSR 8.33 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG5F ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
PIE013 EST_SSR 90.47 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PIE013 EST_SSR 64.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Mb PIE013 EST_SSR 26.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 PIE013 EST_SSR 12.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F PIE013 EST_SSR 62.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa PIE013 EST_SSR 18.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE013 EST_SSR 72.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Mb PIE013 EST_SSR 3.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Ma PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
*N2-950/2 RAPD 96.11 No other positions
*E-AAG/M-CTA-175/5 AFLP 102.99 No other positions

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