CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG6F
Map Start: 0.00 cM
Map Stop: 53.07 cM
Features by Type:
2 gSSR
4 EST_SSR
1 AFLP
7 Total

Map Features

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Items 1 to 7 of 7.
Quercus robur - Genetic_3PxA4_2009 - LG6F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*E-AAG/M-CTA-248 AFLP 0.00 No other positions
POR027 EST_SSR 7.90 Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR027 EST_SSR 8.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 POR027 EST_SSR 17.05 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F POR027 EST_SSR 39.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M POR027 EST_SSR 10.64 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR027 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR027 EST_SSR 21.13 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F POR027 EST_SSR 48.22 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR027 EST_SSR 63.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M POR027 EST_SSR 57.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR027 EST_SSR 52.84 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M POR027 EST_SSR 11.12 (cM) Automated name-based View Maps
ZQP64 gSSR 15.88 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQP64 gSSR 36.25 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M ZQP64 gSSR 15.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M ZQP64 gSSR 76.36 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F ZQP64 gSSR 8.64 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F ZQP64 gSSR 53.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M ZQP64 gSSR 52.24 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M ZQP64 gSSR 15.85 (cM) Automated name-based View Maps
POR017 EST_SSR 22.36 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6M POR017 EST_SSR 31.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR017 EST_SSR 50.98 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F POR017 EST_SSR 33.54 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR017 EST_SSR 43.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M POR017 EST_SSR 26.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F POR017 EST_SSR 25.97 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR017 EST_SSR 31.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR017 EST_SSR 13.56 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 POR017 EST_SSR 25.64 (cM) Automated name-based View Maps
ZQR5b gSSR 34.68 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQR5b gSSR 12.07 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
POR021 EST_SSR 37.37 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F POR021 EST_SSR 42.67 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR021 EST_SSR 30.92 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR021 EST_SSR 43.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR021 EST_SSR 47.15 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F POR021 EST_SSR 41.97 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR021 EST_SSR 43.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 POR021 EST_SSR 44.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M POR021 EST_SSR 16.79 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR021 EST_SSR 30.36 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F POR021 EST_SSR 20.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F POR021 EST_SSR 14.98 (cM) Automated name-based View Maps
PIE260 EST_SSR 53.07 Quercus robur - Genetic_AltFxAltM_2009 - LG6F PIE260 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F PIE260 EST_SSR 40.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M PIE260 EST_SSR 7.82 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE260 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M PIE260 EST_SSR 65.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F PIE260 EST_SSR 58.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M PIE260 EST_SSR 8.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M PIE260 EST_SSR 57.98 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M PIE260 EST_SSR 52.32 (cM) Automated name-based View Maps

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