CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSCP
EST_SSR
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG7F
Map Start: 0.00 cM
Map Stop: 63.93 cM
Features by Type:
1 EST_SSCP
3 RAPD
3 gSSR
3 EST_SSR
2 AFLP
12 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Quercus robur - Genetic_3PxA4_2009 - LG7F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*P17-1400 RAPD 0.00 No other positions
*K8-800/3 RAPD 11.94 No other positions
PIE167 EST_SSR 16.91 Quercus robur - Genetic_3PxA4_2011 - LG7F PIE167 EST_SSR 23.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M PIE167 EST_SSR 61.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M PIE167 EST_SSR 8.08 (cM) Automated name-based View Maps
ZQR49 gSSR 19.48 Quercus robur - Genetic_3PxA4_2011 - LG7M ZQR49 gSSR 56.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7F ZQR49 gSSR 59.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7M ZQR49 gSSR 23.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M ZQR49 gSSR 16.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F ZQR49 gSSR 25.35 (cM) Automated name-based View Maps
*P-CAG/M-ATA-107 AFLP 23.63 No other positions
ZQR108 gSSR 26.65 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG7M ZQR108 gSSR 21.50 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG7M ZQR108 gSSR 21.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M ZQR108 gSSR 52.32 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG7M ZQR108 gSSR 21.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG7M ZQR108 gSSR 21.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG7M ZQR108 gSSR 21.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F ZQR108 gSSR 36.94 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG7M ZQR108 gSSR 21.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7F ZQR108 gSSR 64.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7M ZQR108 gSSR 39.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M ZQR108 gSSR 25.58 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG7M ZQR108 gSSR 20.61 (cM) Automated name-based View Maps
ZQP1/5 gSSR 32.14 Quercus robur - Genetic_3PxA4_2011 - LG7F ZQP1/5 gSSR 31.21 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M ZQP1/5 gSSR 32.05 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 ZQP1/5 gSSR 31.14 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG7F ZQP1/5 gSSR 43.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG7F ZQP1/5 gSSR 43.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG7F ZQP1/5 gSSR 33.28 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M ZQP1/5 gSSR 20.05 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M ZQP1/5 gSSR 37.09 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7Fa ZQP1/5 gSSR 13.35 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7M ZQP1/5 gSSR 54.41 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG7M ZQP1/5 gSSR 14.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7F ZQP1/5 gSSR 59.30 (cM) Automated name-based View Maps
FIR030 EST_SSR 39.13 Quercus robur - Genetic_3PxA4_2011 - LG7M FIR030 EST_SSR 21.73 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5F FIR030 EST_SSR 2.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F FIR030 EST_SSR 22.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M FIR030 EST_SSR 54.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7M FIR030 EST_SSR 16.98 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 FIR030 EST_SSR 26.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F FIR030 EST_SSR 44.89 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7M FIR030 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M FIR030 EST_SSR 44.94 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M FIR030 EST_SSR 11.41 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7F FIR030 EST_SSR 27.35 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7Fa FIR030 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG7F FIR030 EST_SSR 21.55 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG7 FIR030 EST_SSR 30.18 (cM) Automated name-based View Maps
*K8-1700/1 RAPD 45.23 Quercus robur - Genetic_3PxA4_2007 - LG7F *K8-1700/1 RAPD 26.49 (cM) Automated name-based View Maps
PIE137 EST_SSR 51.79 Quercus robur - Genetic_Robur_Consensus_2011 - LG7 PIE137 EST_SSR 8.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F PIE137 EST_SSR 64.09 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M PIE137 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 PIE137 EST_SSR 39.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7M PIE137 EST_SSR 42.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7F PIE137 EST_SSR 53.23 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7Fb PIE137 EST_SSR 5.97 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG7F PIE137 EST_SSR 43.71 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG7F PIE137 EST_SSR 49.61 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F PIE137 EST_SSR 45.66 (cM) Automated name-based View Maps
CL93 EST_SSCP 58.25 Castanea sativa - Genetic_BursaxHoppa_2009 - LG5F CL93 EST_SSCP 4.71 (cM) Automated name-based View Maps
*P-CCA/M-AAT-115 AFLP 63.93 No other positions

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