CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG9F
Map Start: 0.00 cM
Map Stop: 57.52 cM
Features by Type:
4 RAPD
3 EST_SSR
2 gSSR
1 AFLP
10 Total

Map Features

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Items 1 to 10 of 10.
Quercus robur - Genetic_3PxA4_2009 - LG9F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQR121 gSSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG9Fa ZQR121 gSSR 30.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG9F ZQR121 gSSR 63.41 (cM) Automated name-based View Maps
PIE251 EST_SSR 10.23 Quercus robur - Genetic_Robur_Consensus_2011 - LG9 PIE251 EST_SSR 29.20 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M PIE251 EST_SSR 26.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9M PIE251 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9M PIE251 EST_SSR 16.08 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F PIE251 EST_SSR 30.41 (cM) Automated name-based View Maps
*E-AAC/M-CTT-262/3 AFLP 15.59 No other positions
PIE264 EST_SSR 21.73 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F PIE264 EST_SSR 44.79 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M PIE264 EST_SSR 25.29 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M PIE264 EST_SSR 19.41 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 PIE264 EST_SSR 33.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M PIE264 EST_SSR 41.85 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9Fa PIE264 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M PIE264 EST_SSR 34.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F PIE264 EST_SSR 40.81 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9M PIE264 EST_SSR 25.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 PIE264 EST_SSR 40.22 (cM) Automated name-based View Maps
*D3-1700/3 RAPD 28.33 No other positions
*F14-750 RAPD 37.83 No other positions
*K10-800/3 RAPD 43.02 No other positions
*A7-1600/3 RAPD 46.70 No other positions
ZQR31 gSSR 51.39 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 ZQR31 gSSR 17.24 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG9M ZQR31 gSSR 17.78 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9M ZQR31 gSSR 42.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M ZQR31 gSSR 11.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9M ZQR31 gSSR 27.88 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG9M ZQR31 gSSR 15.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG9F ZQR31 gSSR 36.26 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG6F ZQR31 gSSR 30.20 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9F ZQR31 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG9F ZQR31 gSSR 15.40 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9F ZQR31 gSSR 26.38 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG9F ZQR31 gSSR 68.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG9M ZQR31 gSSR 8.43 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9Fb ZQR31 gSSR 5.22 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F ZQR31 gSSR 8.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG9F ZQR31 gSSR 40.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F ZQR31 gSSR 21.86 (cM) Automated name-based View Maps
FIR037 EST_SSR 57.52 Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M FIR037 EST_SSR 3.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9M FIR037 EST_SSR 64.82 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F FIR037 EST_SSR 62.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 FIR037 EST_SSR 59.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9M FIR037 EST_SSR 3.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9Fb FIR037 EST_SSR 13.55 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9M FIR037 EST_SSR 51.95 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M FIR037 EST_SSR 0.00 (cM) Automated name-based View Maps

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