CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2009  (Reference Set)
Min. Correspondence
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Maps LG11F
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSCP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2009 [ View Map Set Info ]
Map Name: LG11F
Map Start: 0.00 cM
Map Stop: 84.83 cM
Features by Type:
1 EST_SSCP
1 gSSR
9 EST_SSR
3 AFLP
14 Total

Map Features

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Items 1 to 14 of 14.
Quercus robur - Genetic_3PxA4_2009 - LG11F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE033 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG11Fb PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE033 EST_SSR 4.07 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F PIE033 EST_SSR 44.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b PIE033 EST_SSR 3.46 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE033 EST_SSR 69.95 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa PIE033 EST_SSR 0.13 (cM) Automated name-based View Maps
ZQR18 gSSR 9.36 Quercus robur - Genetic_3PxA4_2011 - LG11Fb ZQR18 gSSR 25.89 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M ZQR18 gSSR 68.71 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F ZQR18 gSSR 41.06 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa ZQR18 gSSR 8.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11F ZQR18 gSSR 119.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Ma ZQR18 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b ZQR18 gSSR 11.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb ZQR18 gSSR 8.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 ZQR18 gSSR 6.61 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11M ZQR18 gSSR 90.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb ZQR18 gSSR 8.14 (cM) Automated name-based View Maps
PIE102 EST_SSR 22.90 Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE102 EST_SSR 19.95 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Ma PIE102 EST_SSR 14.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11M PIE102 EST_SSR 10.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb PIE102 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b PIE102 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Ma PIE102 EST_SSR 0.00 (cM) Automated name-based View Maps
*E-AAC/M-CCT-119/1 AFLP 26.79 No other positions
CL78 EST_SSCP 29.61 Castanea sativa - Genetic_BursaxHoppa_2009 - LG3M CL78 EST_SSCP 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG3F CL78 EST_SSCP 10.51 (cM) Automated name-based View Maps
*E-AAG/M-CTA-144 AFLP 33.80 Quercus robur - Genetic_3PxA4_2007 - LG11F *E-AAG/M-CTA-144 AFLP 84.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG11F *E-AAG/M-CTA-144 AFLP 49.99 (cM) Automated name-based View Maps
*E-AAG/M-CTT-130 AFLP 42.47 No other positions
FIR104 EST_SSR 47.65 Quercus robur - Genetic_Robur_Consensus_2011 - LG11 FIR104 EST_SSR 30.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F FIR104 EST_SSR 29.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11M FIR104 EST_SSR 30.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11M FIR104 EST_SSR 37.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F FIR104 EST_SSR 27.68 (cM) Automated name-based View Maps
PIE036 EST_SSR 61.91 Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE036 EST_SSR 36.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11M PIE036 EST_SSR 34.44 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE036 EST_SSR 35.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fa PIE036 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Mb PIE036 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE250 EST_SSR 70.16 Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fb PIE250 EST_SSR 10.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE250 EST_SSR 45.06 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fa PIE250 EST_SSR 4.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11M PIE250 EST_SSR 9.49 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11a PIE250 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F PIE250 EST_SSR 8.75 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE250 EST_SSR 24.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fa PIE250 EST_SSR 8.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Ma PIE250 EST_SSR 18.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Mb PIE250 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE257 EST_SSR 71.30 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE257 EST_SSR 16.44 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11M PIE257 EST_SSR 3.59 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11a PIE257 EST_SSR 16.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1M PIE257 EST_SSR 11.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fa PIE257 EST_SSR 13.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE257 EST_SSR 40.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE257 EST_SSR 42.74 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE257 EST_SSR 12.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Mb PIE257 EST_SSR 15.58 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fb PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F PIE257 EST_SSR 2.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE257 EST_SSR 51.07 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Ma PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE275 EST_SSR 72.81 Quercus robur - Genetic_3PxA4_2011 - LG11Fa PIE275 EST_SSR 10.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11M PIE275 EST_SSR 43.76 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1M PIE275 EST_SSR 22.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Mb PIE275 EST_SSR 12.14 (cM) Automated name-based View Maps
GOT035 EST_SSR 80.02 Quercus robur - Genetic_Robur_Consensus_2011 - LG11 GOT035 EST_SSR 61.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fa GOT035 EST_SSR 20.55 (cM) Automated name-based View Maps
FIR031 EST_SSR 84.83 Quercus robur - Genetic_3PxA4_2011 - LG11Fa FIR031 EST_SSR 5.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11a FIR031 EST_SSR 10.74 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG3F FIR031 EST_SSR 8.74 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG3M FIR031 EST_SSR 8.09 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Mb FIR031 EST_SSR 17.55 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fa FIR031 EST_SSR 9.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Mb FIR031 EST_SSR 21.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fb FIR031 EST_SSR 4.18 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 FIR031 EST_SSR 54.56 (cM) Automated name-based View Maps

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