CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Castanea sativa-Genetic_BursaxHoppa_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSCP
EST_SSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Castanea sativa - Genetic_BursaxHoppa_2009 [ View Map Set Info ]
Map Name: LG4F
Map Start: 0.00 cM
Map Stop: 46.32 cM
Features by Type:
3 EST_SSCP
4 EST_SSR
7 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 7 of 7.
Castanea sativa - Genetic_BursaxHoppa_2009 - LG4F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE029 EST_SSR 0.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F PIE029 EST_SSR 81.20 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M PIE029 EST_SSR 0.00 (cM) Automated name-based View Maps
GOT039 EST_SSR 28.86 Quercus robur - Genetic_3PxA4_2009 - LG5F GOT039 EST_SSR 36.68 (cM) Automated name-based View Maps
WAG015 EST_SSR 36.28 Quercus robur - Genetic_AltFxAltM_2009 - LG5F WAG015 EST_SSR 43.61 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Ma WAG015 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F WAG015 EST_SSR 9.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 WAG015 EST_SSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F WAG015 EST_SSR 21.73 (cM) Automated name-based View Maps
POR042 EST_SSR 39.46 Castanea sativa - Genetic_BursaxHoppa_2009 - LG4M POR042 EST_SSR 0.00 (cM) Automated name-based View Maps
S01E07 EST_SSCP 40.49 No other positions
CL8a EST_SSCP 42.77 No other positions
CL31 EST_SSCP 46.32 Castanea sativa - Genetic_BursaxHoppa_2009 - LG4M CL31 EST_SSCP 8.54 (cM) Automated name-based View Maps

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