CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Castanea sativa-Genetic_BursaxHoppa_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSCP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Castanea sativa - Genetic_BursaxHoppa_2009 [ View Map Set Info ]
Map Name: LG5F
Map Start: 0.00 cM
Map Stop: 42.98 cM
Features by Type:
3 EST_SSCP
2 gSSR
4 EST_SSR
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WAG057 EST_SSR 0.00 Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F WAG057 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 WAG057 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M WAG057 EST_SSR 0.00 (cM) Automated name-based View Maps
FIR075 EST_SSR 1.45 Quercus robur - Genetic_3PxA4_2011 - LG3Fa FIR075 EST_SSR 23.02 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M FIR075 EST_SSR 30.58 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3F FIR075 EST_SSR 30.61 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F FIR075 EST_SSR 29.37 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5M FIR075 EST_SSR 3.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma FIR075 EST_SSR 38.96 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 FIR075 EST_SSR 34.95 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M FIR075 EST_SSR 42.72 (cM) Automated name-based View Maps
PIE014 EST_SSR 1.49 Quercus robur - Genetic_3PxA4_2011 - LG7M PIE014 EST_SSR 8.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8F PIE014 EST_SSR 20.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG7 PIE014 EST_SSR 21.86 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG7F PIE014 EST_SSR 38.15 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8Ma PIE014 EST_SSR 16.64 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F PIE014 EST_SSR 47.45 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG7M PIE014 EST_SSR 1.40 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5M PIE014 EST_SSR 3.05 (cM) Automated name-based View Maps
FIR030 EST_SSR 2.40 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M FIR030 EST_SSR 44.94 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M FIR030 EST_SSR 11.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M FIR030 EST_SSR 54.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7M FIR030 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG7F FIR030 EST_SSR 21.55 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M FIR030 EST_SSR 21.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7Fa FIR030 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F FIR030 EST_SSR 22.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7M FIR030 EST_SSR 16.98 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG7 FIR030 EST_SSR 30.18 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 FIR030 EST_SSR 26.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7F FIR030 EST_SSR 27.35 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7F FIR030 EST_SSR 39.13 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F FIR030 EST_SSR 44.89 (cM) Automated name-based View Maps
MCS11 gSSR 3.58 Quercus robur - Genetic_Robur_Consensus_2011 - LG11 MCS11 gSSR 14.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F MCS11 gSSR 36.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F MCS11 gSSR 69.31 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5M MCS11 gSSR 6.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7F MCS11 gSSR 64.40 (cM) Automated name-based View Maps
CL93 EST_SSCP 4.71 Quercus robur - Genetic_3PxA4_2009 - LG7F CL93 EST_SSCP 58.25 (cM) Automated name-based View Maps
S01A03 EST_SSCP 18.22 No other positions
CL80 EST_SSCP 30.16 No other positions
ZQP9 gSSR 42.98 Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG7M ZQP9 gSSR 37.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M ZQP9 gSSR 3.52 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M ZQP9 gSSR 65.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG7F ZQP9 gSSR 84.88 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5M ZQP9 gSSR 29.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7M ZQP9 gSSR 11.85 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG7F ZQP9 gSSR 84.88 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F ZQP9 gSSR 11.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7F ZQP9 gSSR 103.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7M ZQP9 gSSR 89.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7F ZQP9 gSSR 36.05 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG7M ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG7F ZQP9 gSSR 0.00 (cM) Automated name-based View Maps

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