CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Castanea sativa-Genetic_BursaxHoppa_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSCP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Castanea sativa - Genetic_BursaxHoppa_2009 [ View Map Set Info ]
Map Name: LG7F
Map Start: 0.00 cM
Map Stop: 36.71 cM
Features by Type:
2 EST_SSCP
3 gSSR
5 EST_SSR
10 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Castanea sativa - Genetic_BursaxHoppa_2009 - LG7F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
POR009 EST_SSR 0.00 Castanea sativa - Genetic_BursaxHoppa_2009 - LG7M POR009 EST_SSR 8.78 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG8 POR009 EST_SSR 91.01 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG8F POR009 EST_SSR 71.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG8F POR009 EST_SSR 67.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Mb POR009 EST_SSR 13.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG8 POR009 EST_SSR 60.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8Mb POR009 EST_SSR 12.84 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG8F POR009 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8F POR009 EST_SSR 60.19 (cM) Automated name-based View Maps
POR003 EST_SSR 2.05 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M POR003 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3F POR003 EST_SSR 48.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa POR003 EST_SSR 61.95 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Mb POR003 EST_SSR 18.56 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG7M POR003 EST_SSR 0.03 (cM) Automated name-based View Maps
FIR015 EST_SSR 2.83 Castanea sativa - Genetic_BursaxHoppa_2009 - LG7M FIR015 EST_SSR 0.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG8 FIR015 EST_SSR 80.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG8F FIR015 EST_SSR 57.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG8M FIR015 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG8F FIR015 EST_SSR 53.69 (cM) Automated name-based View Maps
POR008 EST_SSR 3.18 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8M POR008 EST_SSR 25.63 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG7M POR008 EST_SSR 16.00 (cM) Automated name-based View Maps
CL66 EST_SSCP 3.93 No other positions
WAG014 EST_SSR 4.71 Quercus petraea - Genetic_Qs28xQs21_2009 - LG8F WAG014 EST_SSR 41.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG8 WAG014 EST_SSR 72.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8Mb WAG014 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG8F WAG014 EST_SSR 63.44 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG8 WAG014 EST_SSR 49.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8M WAG014 EST_SSR 1.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Mb WAG014 EST_SSR 0.00 (cM) Automated name-based View Maps
MCS4 gSSR 6.85 Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG7F MCS4 gSSR 16.10 (cM) Automated name-based View Maps
PQRu5 gSSR 6.96 Quercus robur - Genetic_3PxA4_2007 - LG8M PQRu5 gSSR 37.02 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG7M PQRu5 gSSR 5.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG8M PQRu5 gSSR 52.78 (cM) Automated name-based View Maps
S06B07 EST_SSCP 9.32 No other positions
ZQP110 gSSR 36.71 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG8 ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG7F ZQP110 gSSR 52.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG8F ZQP110 gSSR 6.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG8M ZQP110 gSSR 135.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG8F ZQP110 gSSR 47.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG8F ZQP110 gSSR 48.04 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8M ZQP110 gSSR 77.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG8M ZQP110 gSSR 86.47 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG8M ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8M ZQP110 gSSR 77.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Ma ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8F ZQP110 gSSR 7.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG8 ZQP110 gSSR 18.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG8M ZQP110 gSSR 5.58 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG8F ZQP110 gSSR 39.69 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG8F ZQP110 gSSR 11.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG8M ZQP110 gSSR 94.80 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8F ZQP110 gSSR 0.00 (cM) Automated name-based View Maps

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