CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Castanea sativa-Genetic_BursaxHoppa_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSCP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Castanea sativa - Genetic_BursaxHoppa_2009 [ View Map Set Info ]
Map Name: LG9F
Map Start: 0.00 cM
Map Stop: 39.89 cM
Features by Type:
2 EST_SSCP
2 gSSR
4 EST_SSR
8 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CL81 EST_SSCP 0.00 No other positions
POR063 EST_SSR 18.83 No other positions
PIE059 EST_SSR 19.90 Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F PIE059 EST_SSR 55.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M PIE059 EST_SSR 29.17 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 PIE059 EST_SSR 42.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F PIE059 EST_SSR 11.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F PIE059 EST_SSR 39.48 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9Fa PIE059 EST_SSR 32.70 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M PIE059 EST_SSR 27.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 PIE059 EST_SSR 31.15 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9Fa PIE059 EST_SSR 12.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9M PIE059 EST_SSR 29.47 (cM) Automated name-based View Maps
CL96 EST_SSCP 21.33 Castanea sativa - Genetic_BursaxHoppa_2009 - LG9M CL96 EST_SSCP 7.58 (cM) Automated name-based View Maps
ZQP15 gSSR 23.42 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG9F ZQP15 gSSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG9M ZQP15 gSSR 52.06 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9M ZQP15 gSSR 14.83 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG9F ZQP15 gSSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M ZQP15 gSSR 22.75 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9F ZQP15 gSSR 21.90 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG9M ZQP15 gSSR 52.06 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F ZQP15 gSSR 53.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M ZQP15 gSSR 13.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9Fa ZQP15 gSSR 17.98 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9M ZQP15 gSSR 21.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F ZQP15 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M ZQP15 gSSR 17.88 (cM) Automated name-based View Maps
ZQR31 gSSR 26.38 Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG9F ZQR31 gSSR 40.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG9F ZQR31 gSSR 36.26 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG9M ZQR31 gSSR 8.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9M ZQR31 gSSR 42.68 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9F ZQR31 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG9F ZQR31 gSSR 68.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9Fb ZQR31 gSSR 5.22 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG9M ZQR31 gSSR 17.78 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F ZQR31 gSSR 21.86 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG9M ZQR31 gSSR 15.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9F ZQR31 gSSR 51.39 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 ZQR31 gSSR 17.24 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M ZQR31 gSSR 11.03 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9M ZQR31 gSSR 27.88 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG9F ZQR31 gSSR 15.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG6F ZQR31 gSSR 30.20 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG9F ZQR31 gSSR 62.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG9M ZQR31 gSSR 8.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F ZQR31 gSSR 8.20 (cM) Automated name-based View Maps
FIR033 EST_SSR 34.76 Quercus robur - Genetic_Robur_Consensus_2011 - LG9 FIR033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fb FIR033 EST_SSR 29.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F FIR033 EST_SSR 1.43 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M FIR033 EST_SSR 56.49 (cM) Automated name-based View Maps
GOT067 EST_SSR 39.89 Quercus petraea - Genetic_Qs28xQs21_2011 - LG9M GOT067 EST_SSR 54.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F GOT067 EST_SSR 69.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F GOT067 EST_SSR 53.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 GOT067 EST_SSR 59.92 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fb GOT067 EST_SSR 12.14 (cM) Automated name-based View Maps

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