CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Castanea sativa-Genetic_BursaxHoppa_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSCP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Castanea sativa - Genetic_BursaxHoppa_2009 [ View Map Set Info ]
Map Name: LG9M
Map Start: 0.00 cM
Map Stop: 29.85 cM
Features by Type:
3 EST_SSCP
2 EST_SSR
2 gSSR
7 Total

Map Features

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Items 1 to 7 of 7.
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CL12 EST_SSCP 0.00 No other positions
S08H11 EST_SSCP 5.30 No other positions
CL96 EST_SSCP 7.58 Castanea sativa - Genetic_BursaxHoppa_2009 - LG9F CL96 EST_SSCP 21.33 (cM) Automated name-based View Maps
ZQP15 gSSR 14.83 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M ZQP15 gSSR 22.75 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9F ZQP15 gSSR 21.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9Fa ZQP15 gSSR 17.98 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9M ZQP15 gSSR 21.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG9F ZQP15 gSSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG9M ZQP15 gSSR 52.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M ZQP15 gSSR 17.88 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M ZQP15 gSSR 13.83 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG9F ZQP15 gSSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG9M ZQP15 gSSR 52.06 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9F ZQP15 gSSR 23.42 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F ZQP15 gSSR 53.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F ZQP15 gSSR 0.00 (cM) Automated name-based View Maps
PIE028 EST_SSR 23.18 Quercus robur - Genetic_3PxA4_2011 - LG9M PIE028 EST_SSR 38.45 (cM) Automated name-based View Maps
MCS15 gSSR 24.83 Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9M MCS15 gSSR 36.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG9M MCS15 gSSR 17.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M MCS15 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9M MCS15 gSSR 52.49 (cM) Automated name-based View Maps
FIR045 EST_SSR 29.85 Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F FIR045 EST_SSR 3.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG9M FIR045 EST_SSR 69.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 FIR045 EST_SSR 66.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9M FIR045 EST_SSR 6.76 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9M FIR045 EST_SSR 45.39 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M FIR045 EST_SSR 6.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F FIR045 EST_SSR 17.78 (cM) Automated name-based View Maps

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