CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Castanea sativa-Genetic_BursaxHoppa_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSCP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Castanea sativa - Genetic_BursaxHoppa_2009 [ View Map Set Info ]
Map Name: LG12M
Map Start: 0.00 cM
Map Stop: 18.58 cM
Features by Type:
1 EST_SSCP
6 EST_SSR
2 gSSR
9 Total

Map Features

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Items 1 to 9 of 9.
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TCS3 gSSR 0.00 Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG12F TCS3 gSSR 18.30 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12F TCS3 gSSR 31.17 (cM) Automated name-based View Maps
MCS32 gSSR 1.11 Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG12F MCS32 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12F MCS32 gSSR 0.00 (cM) Automated name-based View Maps
GOT002 EST_SSR 3.02 No other positions
GOT014 EST_SSR 6.72 Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M GOT014 EST_SSR 36.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M GOT014 EST_SSR 11.55 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F GOT014 EST_SSR 17.74 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F GOT014 EST_SSR 45.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M GOT014 EST_SSR 53.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12F GOT014 EST_SSR 16.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 GOT014 EST_SSR 7.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12F GOT014 EST_SSR 36.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M GOT014 EST_SSR 51.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 GOT014 EST_SSR 7.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M GOT014 EST_SSR 8.50 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12F GOT014 EST_SSR 26.03 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M GOT014 EST_SSR 36.47 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12M GOT014 EST_SSR 8.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F GOT014 EST_SSR 67.01 (cM) Automated name-based View Maps
GOT032 EST_SSR 7.66 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F GOT032 EST_SSR 22.44 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 GOT032 EST_SSR 24.28 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F GOT032 EST_SSR 36.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M GOT032 EST_SSR 28.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12F GOT032 EST_SSR 31.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F GOT032 EST_SSR 20.16 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12F GOT032 EST_SSR 26.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F GOT032 EST_SSR 9.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M GOT032 EST_SSR 25.53 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 GOT032 EST_SSR 24.87 (cM) Automated name-based View Maps
PIE030 EST_SSR 9.26 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PIE030 EST_SSR 11.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5F PIE030 EST_SSR 33.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F PIE030 EST_SSR 11.69 (cM) Automated name-based View Maps
CL20 EST_SSCP 10.79 Castanea sativa - Genetic_BursaxHoppa_2009 - LG12F CL20 EST_SSCP 48.14 (cM) Automated name-based View Maps
FIR059 EST_SSR 13.40 Quercus robur - Genetic_3PxA4_2009 - LG12F FIR059 EST_SSR 65.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12F FIR059 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M FIR059 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M FIR059 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M FIR059 EST_SSR 50.81 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M FIR059 EST_SSR 51.44 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F FIR059 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 FIR059 EST_SSR 48.30 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12F FIR059 EST_SSR 16.74 (cM) Automated name-based View Maps
GOT009 EST_SSR 18.58 Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M GOT009 EST_SSR 40.13 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F GOT009 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 GOT009 EST_SSR 53.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M GOT009 EST_SSR 4.19 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 GOT009 EST_SSR 7.33 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M GOT009 EST_SSR 32.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M GOT009 EST_SSR 3.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 GOT009 EST_SSR 3.66 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F GOT009 EST_SSR 33.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M GOT009 EST_SSR 11.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 GOT009 EST_SSR 2.56 (cM) Automated name-based View Maps

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