CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_AltFxAltM_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_AltFxAltM_2009 [ View Map Set Info ]
Map Name: LG2M
Map Start: 0.00 cM
Map Stop: 59.54 cM
Features by Type:
2 gSSR
7 EST_SSR
3 AFLP
12 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Quercus robur - Genetic_AltFxAltM_2009 - LG2M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR103 EST_SSR 0.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F FIR103 EST_SSR 42.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fa FIR103 EST_SSR 2.24 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M FIR103 EST_SSR 16.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR103 EST_SSR 108.71 (cM) Automated name-based View Maps
E31M49_277.3vad AFLP 12.88 No other positions
FIR013 EST_SSR 18.40 Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR013 EST_SSR 30.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR013 EST_SSR 18.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR013 EST_SSR 86.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2F FIR013 EST_SSR 0.00 (cM) Automated name-based View Maps
ZQP104 gSSR 19.48 Quercus robur - Genetic_AltFxAltM_2011 - LG2F ZQP104 gSSR 2.42 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG2M ZQP104 gSSR 35.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG2M ZQP104 gSSR 60.98 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F ZQP104 gSSR 21.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F ZQP104 gSSR 37.21 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F ZQP104 gSSR 37.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 ZQP104 gSSR 44.53 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M ZQP104 gSSR 32.81 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG2F ZQP104 gSSR 29.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F ZQP104 gSSR 32.93 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG2F ZQP104 gSSR 29.69 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG2M ZQP104 gSSR 35.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 ZQP104 gSSR 53.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb ZQP104 gSSR 43.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M ZQP104 gSSR 85.39 (cM) Automated name-based View Maps
P25M50_283.9vad AFLP 20.70 No other positions
FIR112 EST_SSR 26.49 Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR112 EST_SSR 34.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR112 EST_SSR 38.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M FIR112 EST_SSR 58.41 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb FIR112 EST_SSR 35.49 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 FIR112 EST_SSR 50.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2F FIR112 EST_SSR 3.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Ma FIR112 EST_SSR 35.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR112 EST_SSR 77.05 (cM) Automated name-based View Maps
ZQP36 gSSR 30.25 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG2M ZQP36 gSSR 24.30 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG1F ZQP36 gSSR 14.52 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2M ZQP36 gSSR 32.32 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG1M ZQP36 gSSR 43.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 ZQP36 gSSR 53.20 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG2F ZQP36 gSSR 21.32 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F ZQP36 gSSR 25.76 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F ZQP36 gSSR 34.48 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG1F ZQP36 gSSR 27.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F ZQP36 gSSR 34.66 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG2F ZQP36 gSSR 21.32 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M ZQP36 gSSR 39.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Ma ZQP36 gSSR 50.13 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG2M ZQP36 gSSR 60.98 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb ZQP36 gSSR 32.92 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F ZQP36 gSSR 44.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2F ZQP36 gSSR 40.72 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG2F ZQP36 gSSR 42.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb ZQP36 gSSR 50.25 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG2M ZQP36 gSSR 24.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M ZQP36 gSSR 73.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M ZQP36 gSSR 55.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 ZQP36 gSSR 47.60 (cM) Automated name-based View Maps
FIR079 EST_SSR 35.36 Quercus robur - Genetic_3PxA4_2011 - LG2Ma FIR079 EST_SSR 56.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR079 EST_SSR 64.32 (cM) Automated name-based View Maps
FIR125 EST_SSR 37.34 Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR125 EST_SSR 65.91 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 FIR125 EST_SSR 60.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa FIR125 EST_SSR 4.32 (cM) Automated name-based View Maps
FIR065 EST_SSR 39.78 Quercus robur - Genetic_3PxA4_2011 - LG2Ma FIR065 EST_SSR 57.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR065 EST_SSR 67.84 (cM) Automated name-based View Maps
E35M50_180.4vad AFLP 44.11 No other positions
FIR032 EST_SSR 59.54 Quercus robur - Genetic_AltFxAltM_2011 - LG2F FIR032 EST_SSR 22.97 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR032 EST_SSR 37.76 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR032 EST_SSR 53.48 (cM) Automated name-based View Maps

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