CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_AltFxAltM_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5F
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_AltFxAltM_2009 [ View Map Set Info ]
Map Name: LG5F
Map Start: 0.00 cM
Map Stop: 51.99 cM
Features by Type:
5 EST_SSR
1 gSSR
2 AFLP
8 Total

Map Features

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Items 1 to 8 of 8.
Quercus robur - Genetic_AltFxAltM_2009 - LG5F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQP58 gSSR 0.00 Quercus robur - QTL_3PxA4_2008_Debourrement - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F ZQP58 gSSR 67.38 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5F ZQP58 gSSR 97.11 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5F ZQP58 gSSR 97.11 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F ZQP58 gSSR 71.24 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa ZQP58 gSSR 24.38 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5F ZQP58 gSSR 8.34 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5M ZQP58 gSSR 101.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma ZQP58 gSSR 5.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F ZQP58 gSSR 36.88 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M ZQP58 gSSR 8.33 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5F ZQP58 gSSR 6.36 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5M ZQP58 gSSR 84.68 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG10M ZQP58 gSSR 96.83 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5M ZQP58 gSSR 101.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG4M ZQP58 gSSR 22.10 (cM) Automated name-based View Maps
FIR024 EST_SSR 15.12 Quercus robur - Genetic_3PxA4_2011 - LG5Ma FIR024 EST_SSR 25.97 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F FIR024 EST_SSR 20.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5F FIR024 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F FIR024 EST_SSR 45.09 (cM) Automated name-based View Maps
E43M48_167.5moe AFLP 24.35 No other positions
WAG027 EST_SSR 30.13 Quercus robur - Genetic_3PxA4_2009 - LG5F WAG027 EST_SSR 16.87 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8F WAG027 EST_SSR 65.45 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG8 WAG027 EST_SSR 66.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG8Mb WAG027 EST_SSR 19.38 (cM) Automated name-based View Maps
WAG017 EST_SSR 33.84 Quercus robur - Genetic_3PxA4_2011 - LG5Fb WAG017 EST_SSR 3.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F WAG017 EST_SSR 12.76 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F WAG017 EST_SSR 20.26 (cM) Automated name-based View Maps
PIE201 EST_SSR 37.57 Quercus robur - Genetic_3PxA4_2009 - LG5M PIE201 EST_SSR 18.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F PIE201 EST_SSR 19.96 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F PIE201 EST_SSR 10.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 PIE201 EST_SSR 63.07 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Ma PIE201 EST_SSR 1.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F PIE201 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fb PIE201 EST_SSR 26.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE201 EST_SSR 14.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M PIE201 EST_SSR 79.02 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma PIE201 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Ma PIE201 EST_SSR 6.96 (cM) Automated name-based View Maps
WAG015 EST_SSR 43.61 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F WAG015 EST_SSR 9.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F WAG015 EST_SSR 21.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Ma WAG015 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 WAG015 EST_SSR 65.34 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG4F WAG015 EST_SSR 36.28 (cM) Automated name-based View Maps
P18M52_65.0moe AFLP 51.99 No other positions

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