CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_AltFxAltM_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_AltFxAltM_2009 [ View Map Set Info ]
Map Name: LG10F
Map Start: 0.00 cM
Map Stop: 43.02 cM
Features by Type:
1 gSSR
4 EST_SSR
4 AFLP
9 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Quercus robur - Genetic_AltFxAltM_2009 - LG10F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
P15M48_248.3moe AFLP 0.00 No other positions
PIE233 EST_SSR 6.96 Quercus robur - Genetic_Robur_Consensus_2011 - LG10 PIE233 EST_SSR 18.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG10M PIE233 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG10F PIE233 EST_SSR 30.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG10M PIE233 EST_SSR 39.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG10 PIE233 EST_SSR 45.40 (cM) Automated name-based View Maps
ZQR11 gSSR 12.21 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG10F ZQR11 gSSR 16.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG10F ZQR11 gSSR 48.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG10F ZQR11 gSSR 48.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG10 ZQR11 gSSR 23.20 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG10M ZQR11 gSSR 63.14 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG10F ZQR11 gSSR 24.86 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG10M ZQR11 gSSR 41.45 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG10M ZQR11 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG10F ZQR11 gSSR 54.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG10F ZQR11 gSSR 35.15 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG10M ZQR11 gSSR 17.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG10F ZQR11 gSSR 34.06 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG10M ZQR11 gSSR 51.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG10M ZQR11 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG10M ZQR11 gSSR 37.84 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG10M ZQR11 gSSR 51.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG10F ZQR11 gSSR 42.95 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG10F ZQR11 gSSR 44.29 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG10F ZQR11 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG10M ZQR11 gSSR 74.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG10F ZQR11 gSSR 39.16 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG10F ZQR11 gSSR 47.60 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG10F ZQR11 gSSR 0.00 (cM) Automated name-based View Maps
WAG020 EST_SSR 19.04 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG10M WAG020 EST_SSR 26.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG10F WAG020 EST_SSR 38.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG10M WAG020 EST_SSR 49.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG10F WAG020 EST_SSR 21.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG10 WAG020 EST_SSR 21.36 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG10M WAG020 EST_SSR 26.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG10M WAG020 EST_SSR 22.03 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG10M WAG020 EST_SSR 12.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG10F WAG020 EST_SSR 28.04 (cM) Automated name-based View Maps
PIE244 EST_SSR 22.90 Quercus robur - Genetic_AltFxAltM_2011 - LG10M PIE244 EST_SSR 8.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG10F PIE244 EST_SSR 39.12 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG10F PIE244 EST_SSR 16.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG10 PIE244 EST_SSR 20.36 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG10M PIE244 EST_SSR 26.07 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG10M PIE244 EST_SSR 28.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG10F PIE244 EST_SSR 13.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG10 PIE244 EST_SSR 35.39 (cM) Automated name-based View Maps
E40M62_278.1moe AFLP 34.78 No other positions
PIE187 EST_SSR 36.48 Quercus robur - Genetic_AltFxAltM_2011 - LG10M PIE187 EST_SSR 37.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG10 PIE187 EST_SSR 55.45 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG10F PIE187 EST_SSR 0.00 (cM) Automated name-based View Maps
P21M60_131.0moe AFLP 39.94 No other positions
E43M62_366.5moe AFLP 43.02 No other positions

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