CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_11PxQs29_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7Fa
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 [ View Map Set Info ]
Map Name: LG7Fa
Map Start: 0.00 cM
Map Stop: 34.89 cM
Features by Type:
1 gSSR
3 EST_SSR
1 AFLP
5 Total

Map Features

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Items 1 to 5 of 5.
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7Fa
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR030 EST_SSR 0.00 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M FIR030 EST_SSR 44.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7M FIR030 EST_SSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5F FIR030 EST_SSR 2.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7M FIR030 EST_SSR 16.98 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M FIR030 EST_SSR 21.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7F FIR030 EST_SSR 27.35 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7M FIR030 EST_SSR 54.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG7 FIR030 EST_SSR 30.18 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F FIR030 EST_SSR 44.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 FIR030 EST_SSR 26.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7F FIR030 EST_SSR 39.13 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F FIR030 EST_SSR 22.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG7F FIR030 EST_SSR 21.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M FIR030 EST_SSR 11.41 (cM) Automated name-based View Maps
ZQP1/5 gSSR 13.35 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 ZQP1/5 gSSR 31.14 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG7F ZQP1/5 gSSR 43.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7F ZQP1/5 gSSR 59.30 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M ZQP1/5 gSSR 37.09 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M ZQP1/5 gSSR 32.05 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M ZQP1/5 gSSR 20.05 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG7M ZQP1/5 gSSR 54.41 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG7F ZQP1/5 gSSR 43.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7F ZQP1/5 gSSR 31.21 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG7F ZQP1/5 gSSR 43.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG7M ZQP1/5 gSSR 14.62 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG7F ZQP1/5 gSSR 33.28 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG7F ZQP1/5 gSSR 32.14 (cM) Automated name-based View Maps
VIT006 EST_SSR 19.85 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M VIT006 EST_SSR 37.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG7 VIT006 EST_SSR 51.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7F VIT006 EST_SSR 5.13 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG7F VIT006 EST_SSR 12.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 VIT006 EST_SSR 11.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F VIT006 EST_SSR 12.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M VIT006 EST_SSR 19.33 (cM) Automated name-based View Maps
POR025 EST_SSR 26.21 Quercus robur - Genetic_3PxA4_2011 - LG7F POR025 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 POR025 EST_SSR 1.09 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7F POR025 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG7F POR025 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG7F POR025 EST_SSR 8.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F POR025 EST_SSR 1.03 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG7M POR025 EST_SSR 42.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG7M POR025 EST_SSR 77.96 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG7M POR025 EST_SSR 16.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG7 POR025 EST_SSR 57.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7M POR025 EST_SSR 47.39 (cM) Automated name-based View Maps
P-CAG/M-GCA-80/2 AFLP 34.89 No other positions

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