CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_11PxQs29_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9Fa
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 [ View Map Set Info ]
Map Name: LG9Fa
Map Start: 0.00 cM
Map Stop: 53.35 cM
Features by Type:
5 EST_SSR
1 gSSR
1 AFLP
7 Total

Map Features

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Items 1 to 7 of 7.
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9Fa
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
E-AAC/M-CTT-125/3 AFLP 0.00 No other positions
ZQP15 gSSR 17.98 Castanea sativa - Genetic_BursaxHoppa_2009 - LG9M ZQP15 gSSR 14.83 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG9M ZQP15 gSSR 52.06 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG9F ZQP15 gSSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG9F ZQP15 gSSR 65.34 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M ZQP15 gSSR 22.75 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9F ZQP15 gSSR 23.42 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F ZQP15 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M ZQP15 gSSR 17.88 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F ZQP15 gSSR 53.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG9M ZQP15 gSSR 52.06 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M ZQP15 gSSR 13.83 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9F ZQP15 gSSR 21.90 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9M ZQP15 gSSR 21.60 (cM) Automated name-based View Maps
POR045 EST_SSR 21.60 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F POR045 EST_SSR 4.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 POR045 EST_SSR 48.45 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 POR045 EST_SSR 26.30 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9F POR045 EST_SSR 56.03 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M POR045 EST_SSR 30.84 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M POR045 EST_SSR 27.17 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M POR045 EST_SSR 10.31 (cM) Automated name-based View Maps
PIE059 EST_SSR 32.70 Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F PIE059 EST_SSR 39.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 PIE059 EST_SSR 31.15 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG9Fa PIE059 EST_SSR 12.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9M PIE059 EST_SSR 29.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG9F PIE059 EST_SSR 55.47 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F PIE059 EST_SSR 11.32 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG9M PIE059 EST_SSR 27.67 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 PIE059 EST_SSR 42.24 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG9F PIE059 EST_SSR 19.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9M PIE059 EST_SSR 29.17 (cM) Automated name-based View Maps
WAG064 EST_SSR 44.75 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F WAG064 EST_SSR 27.83 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 WAG064 EST_SSR 52.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M WAG064 EST_SSR 55.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG9F WAG064 EST_SSR 2.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG9M WAG064 EST_SSR 63.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG9F WAG064 EST_SSR 47.79 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 WAG064 EST_SSR 16.41 (cM) Automated name-based View Maps
GOT005 EST_SSR 51.79 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 GOT005 EST_SSR 33.22 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F GOT005 EST_SSR 36.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F GOT005 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 GOT005 EST_SSR 70.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M GOT005 EST_SSR 73.18 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F GOT005 EST_SSR 30.25 (cM) Automated name-based View Maps
GOT046 EST_SSR 53.35 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9M GOT046 EST_SSR 70.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG9F GOT046 EST_SSR 38.13 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG9 GOT046 EST_SSR 67.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG7 GOT046 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG9 GOT046 EST_SSR 5.71 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG7F GOT046 EST_SSR 0.00 (cM) Automated name-based View Maps

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