CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_11PxQs29_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 [ View Map Set Info ]
Map Name: LG3M
Map Start: 0.00 cM
Map Stop: 71.82 cM
Features by Type:
1 gSSR
3 EST_SSR
2 AFLP
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
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Items 1 to 6 of 6.
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG3M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
E-AAC/M-CAC-139/2 AFLP 0.00 No other positions
PIE065 EST_SSR 17.71 Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE065 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG3Fa PIE065 EST_SSR 28.91 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3F PIE065 EST_SSR 62.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3F PIE065 EST_SSR 60.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE065 EST_SSR 0.02 (cM) Automated name-based View Maps
TCS15 gSSR 27.99 Castanea sativa - Genetic_BursaxHoppa_2009 - LG8F TCS15 gSSR 37.93 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG8M TCS15 gSSR 39.21 (cM) Automated name-based View Maps
P-CCA/M-CAA-53/2 AFLP 36.86 No other positions
VIT022 EST_SSR 53.64 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb VIT022 EST_SSR 0.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG3Fa VIT022 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3F VIT022 EST_SSR 33.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 VIT022 EST_SSR 40.13 (cM) Automated name-based View Maps
POR032 EST_SSR 71.82 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb POR032 EST_SSR 20.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Mb POR032 EST_SSR 32.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 POR032 EST_SSR 81.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa POR032 EST_SSR 65.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3M POR032 EST_SSR 98.91 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3F POR032 EST_SSR 53.24 (cM) Automated name-based View Maps

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